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检测海洋细菌浮游生物中的生长率和翻译补偿假说。

Testing the growth rate and translation compensation hypotheses in marine bacterioplankton.

机构信息

Department of Marine Biology, Leon H. Charney School of Marine Sciences, University of Haifa, Israel.

Israel Oceanographic and Limnological Research, Haifa, Israel.

出版信息

Environ Microbiol. 2023 Jun;25(6):1186-1199. doi: 10.1111/1462-2920.16346. Epub 2023 Feb 22.

DOI:10.1111/1462-2920.16346
PMID:36747465
Abstract

Two different hypotheses have been raised as to how temperature affects resource allocation in microorganisms. The translation-compensation hypothesis (TCH) predicts that the increase in enzymatic efficiency with temperature results in fewer required ribosomes per cell and lower RNA:protein ratio. In contrast, the growth rate hypothesis (GRH) predicts that increasing the growth rate with temperature requires more ribosomes and hence a higher cellular RNA:protein. We tested these two hypotheses in laboratory cultures of Prochlorococcus and Alteromonas as well as over an annual cycle in the Eastern Mediterranean Sea. The RNA:protein of Alteromonas mostly decreased with temperature in accordance with the TCH, while that of Prochlorococcus increased with temperature, as predicted by the GRH. No support was found for either hypothesis in surface waters from the Eastern Mediterranean, whereas the fraction of phosphorus in RNA was positively correlated with per-cell bacterial production in the deep chlorophyll maximum, supporting the GRH in this niche. A considerable part of the cellular phosphorus was not allocated to RNA, DNA, phospholipids or polyphosphate, raising the question which cellular molecules contain these P reserves. While macromolecular quotas differed significantly between laboratory cultures and field samples, these were connected through a power law, suggesting common rules of resource allocation.

摘要

关于温度如何影响微生物资源分配,有两种不同的假说。翻译补偿假说(TCH)预测,温度升高会导致酶效率提高,从而使每个细胞所需的核糖体减少,RNA:蛋白比例降低。相比之下,生长速率假说(GRH)预测,随着温度升高而增加的生长速率需要更多的核糖体,因此细胞内 RNA:蛋白的比例更高。我们在实验室培养的聚球藻和交替假单胞菌以及地中海东部的年际周期中检验了这两个假说。根据 TCH,交替假单胞菌的 RNA:蛋白大多随温度降低,而聚球藻的 RNA:蛋白随温度升高,这与 GRH 的预测一致。在东地中海的表层水中,这两个假说都没有得到支持,而 RNA 中的磷分与深层叶绿素最大值中的每细胞细菌生产力呈正相关,这支持了 GRH 在这一生态位中的作用。相当一部分细胞磷没有分配到 RNA、DNA、磷脂或多磷酸盐中,这就提出了一个问题,即哪些细胞分子含有这些磷储备。虽然实验室培养物和现场样本之间的大分子配额有显著差异,但它们通过幂律联系在一起,这表明资源分配有共同的规律。

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