Hall Aaron R, Choi Yeol Kyo, Im Wonpil, Vavylonis Dimitrios
bioRxiv. 2023 Jan 27:2023.01.27.525865. doi: 10.1101/2023.01.27.525865.
The organization of the cytokinetic ring at the cell equator of dividing animal and fungi cells depends crucially on the anillin scaffold proteins. In fission yeast, anillin related Mid1 binds to the plasma membrane and helps anchor and organize a medial broad band of cytokinetic nodes, which are the precursors of the contractile ring. Similar to other anillins, Mid1 contains a C terminal globular domain with two potential regions for membrane binding, the Pleckstrin Homology (PH) and C2 domains, and an N terminal intrinsically disordered region that is strongly regulated by phosphorylation. Previous studies have shown that both PH and C2 domains can associate with the membrane, preferring phosphatidylinositol-(4,5)-bisphosphate (PIP ) lipids. However, it is unclear if they can simultaneously bind to the membrane in a way that allows dimerization or oligomerization of Mid1, and if one domain plays a dominant role. To elucidate Mid1's membrane binding mechanism, we used the available structural information of the C terminal region of Mid1 in all-atom molecular dynamics (MD) near a membrane with a lipid composition based on experimental measurements (including PIP lipids). The disordered L3 loop of C2, as well as the PH domain, separately bind the membrane through charged lipid contacts. In simulations with the full C terminal region started away from the membrane, Mid1 binds through the L3 loop and is stabilized in a vertical orientation with the PH domain away from the membrane. However, a configuration with both C2 and PH initially bound to the membrane remains associated with the membrane. These multiple modes of binding may reflect Mid1's multiple interactions with membranes and other node proteins, and ability to sustain mechanical forces.
在动物和真菌细胞分裂时,细胞赤道面处细胞分裂环的组织形成关键依赖于膜收缩蛋白支架蛋白。在裂殖酵母中,与膜收缩蛋白相关的Mid1与质膜结合,并有助于锚定和组织细胞分裂节点的中间宽带,这些节点是收缩环的前体。与其他膜收缩蛋白类似,Mid1包含一个C端球状结构域,具有两个潜在的膜结合区域,即普列克底物蛋白同源(PH)结构域和C2结构域,以及一个N端内在无序区域,该区域受磷酸化的强烈调控。先前的研究表明,PH结构域和C2结构域都可以与膜结合,更倾向于磷脂酰肌醇-(4,5)-二磷酸(PIP₂)脂质。然而,尚不清楚它们是否能以允许Mid1二聚化或寡聚化的方式同时结合到膜上,以及是否有一个结构域起主导作用。为了阐明Mid1的膜结合机制,我们基于实验测量(包括PIP₂脂质),利用全原子分子动力学(MD)中Mid1 C端区域在膜附近的可用结构信息。C2结构域的无序L3环以及PH结构域通过带电脂质接触分别与膜结合。在从远离膜开始的完整C端区域模拟中,Mid1通过L3环结合,并以PH结构域远离膜的垂直方向稳定下来。然而,C2和PH最初都与膜结合的构型仍然与膜相关。这些多种结合模式可能反映了Mid1与膜和其他节点蛋白的多种相互作用,以及承受机械力的能力。