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莱茵衣藻 D-苏氨酸醛缩酶与吡哆醛 5'-磷酸复合物的结构。

Structure of pyridoxal 5'-phosphate-bound D-threonine aldolase from Chlamydomonas reinhardtii.

机构信息

Department of Biomolecular Science, Faculty of Science, Toho University, 2-2-1 Miyama, Funabashi, Chiba 274-8510, Japan.

Multidisciplinary Science Cluster, Research and Education Faculty, Kochi University, B200 Monobe, Nankoku, Kochi 783-8502, Japan.

出版信息

Acta Crystallogr F Struct Biol Commun. 2023 Feb 1;79(Pt 2):31-37. doi: 10.1107/S2053230X23000304. Epub 2023 Feb 2.

Abstract

D-Threonine aldolase (DTA) is a pyridoxal-5'-phosphate-dependent enzyme which catalyzes the reversible aldol reaction of glycine with a corresponding aldehyde to yield the D-form β-hydroxy-α-amino acid. This study produced and investigated the crystal structure of DTA from Chlamydomonas reinhardtii (CrDTA) at 1.85 Å resolution. To our knowledge, this is the first report on the crystal structure of eukaryotic DTA. Compared with the structure of bacterial DTA, CrDTA has a similar arrangement of active-site residues. On the other hand, we speculated that some non-conserved residues alter the affinity for substrates and inhibitors. The structure of CrDTA could provide insights into the structural framework for structure-guided protein engineering studies to modify reaction selectivity.

摘要

D-苏氨酸醛缩酶(DTA)是一种依赖吡哆醛-5'-磷酸的酶,它催化甘氨酸与相应醛的可逆醛缩反应,生成 D 型β-羟基-α-氨基酸。本研究产生并研究了莱茵衣藻(CrDTA)的 DTA 的晶体结构,分辨率为 1.85Å。据我们所知,这是真核 DTA 晶体结构的首次报道。与细菌 DTA 的结构相比,CrDTA 的活性位点残基排列相似。另一方面,我们推测一些非保守残基改变了对底物和抑制剂的亲和力。CrDTA 的结构可以为基于结构的蛋白质工程研究提供结构框架,以改变反应选择性。

相似文献

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Structure of pyridoxal 5'-phosphate-bound D-threonine aldolase from Chlamydomonas reinhardtii.莱茵衣藻 D-苏氨酸醛缩酶与吡哆醛 5'-磷酸复合物的结构。
Acta Crystallogr F Struct Biol Commun. 2023 Feb 1;79(Pt 2):31-37. doi: 10.1107/S2053230X23000304. Epub 2023 Feb 2.
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Crystallization and X-ray analysis of D-threonine aldolase from Chlamydomonas reinhardtii.莱茵衣藻D-苏氨酸醛缩酶的结晶与X射线分析
Acta Crystallogr F Struct Biol Commun. 2017 Feb 1;73(Pt 2):86-89. doi: 10.1107/S2053230X1602063X. Epub 2017 Jan 19.

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Dali server: structural unification of protein families.达尔服务器:蛋白质家族的结构统一。
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Crystallization and X-ray analysis of D-threonine aldolase from Chlamydomonas reinhardtii.莱茵衣藻D-苏氨酸醛缩酶的结晶与X射线分析
Acta Crystallogr F Struct Biol Commun. 2017 Feb 1;73(Pt 2):86-89. doi: 10.1107/S2053230X1602063X. Epub 2017 Jan 19.

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