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sp. nov.,一种从红树林沉积物中分离出的新物种。

sp. nov., a novel species isolated from mangrove sediment.

作者信息

Yao Sijie, Yang Guiqin, Zhang Xueying, Lin Canfen, Zhuang Li

机构信息

Guangdong Key Laboratory of Environmental Pollution and Health, School of Environment, Jinan University, Guangzhou, 510632, PR China.

出版信息

Int J Syst Evol Microbiol. 2022 Nov;72(11). doi: 10.1099/ijsem.0.005618.

Abstract

Three bacterial strains, designated as AS18, AS27 and AS39, were obtained from mangrove sediment sampled in Futian district, Shenzhen, PR China. Cells of these strains were Gram-negative rods with no flagella. They were able to grow at 10-42 °C (optimum, 37 °C), at pH 5-9 (optimum, pH 6) and in 1-11 % (w/v) NaCl (optimum, 2 %). Phylogenetic analysis based on 16S rRNA gene sequences indicated that the new isolates were clustered within the genus , closely related to (95.1 % similarity) and (94.7 % similarity). Phylogenomic analysis based on multiple core genes revealed that the three strains were located in a different cluster from other closely related strains of the genus . Digital DNA-DNA hybridization, average nucleotide identity and average amino acid identity values calculated from genome sequences between isolates and type strains were lower than 25, 75 and 72 %, respectively. The dominant fatty acids were iso-C and iso-C G. The main respiratory quinone was identified as MK-6. The major polar lipids contained phosphatidylethanolamine, two unidentified aminolipids and five unidentified lipids. The results of multiphase taxonomy suggested that the three strains should be assigned to a novel species of the genus , for which the name sp. nov. is proposed, with the type strain AS18 (=GDMCC 1.2739=JCM 34871).

摘要

从中国深圳福田区采集的红树林沉积物中获得了三株细菌菌株,分别命名为AS18、AS27和AS39。这些菌株的细胞为革兰氏阴性杆菌,无鞭毛。它们能够在10-42°C(最适温度为37°C)、pH值为5-9(最适pH值为6)以及1-11%(w/v)NaCl(最适浓度为2%)的条件下生长。基于16S rRNA基因序列的系统发育分析表明,这些新分离株聚集在该属内,与[具体菌株1](相似度为95.1%)和[具体菌株2](相似度为94.7%)密切相关。基于多个核心基因的系统基因组分析表明,这三株菌株与该属其他密切相关菌株位于不同的聚类中。从分离株和模式菌株的基因组序列计算得到的数字DNA-DNA杂交、平均核苷酸同一性和平均氨基酸同一性值分别低于25%、75%和72%。主要脂肪酸为异-C[具体脂肪酸1]和异-C[具体脂肪酸2]。主要呼吸醌被鉴定为MK-6。主要极性脂质包括磷脂酰乙醇胺、两种未鉴定的氨基脂质和五种未鉴定的脂质。多相分类学结果表明,这三株菌株应被归入该属的一个新物种,为此提出新物种名称[具体名称] sp. nov.,模式菌株为AS18(=GDMCC 1.2739=JCM 34871)。

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