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木聚糖食红树林单胞菌新种,从马来西亚马塘红树林的河口红树林沉积物中分离得到。

Mangrovimonas xylaniphaga sp. nov. isolated from estuarine mangrove sediment of Matang Mangrove Forest, Malaysia.

作者信息

Dinesh Balachandra, Furusawa Go, Amirul A A

机构信息

Centre for Chemical Biology, Sains@USM, Universiti Sains Malaysia, No. 10, Persiaran Bukit Jambul, 11900, Bayan Lepas, Penang, Malaysia.

School of Biological Sciences, Universiti Sains Malaysia, 11800, Minden, Penang, Malaysia.

出版信息

Arch Microbiol. 2017 Jan;199(1):63-67. doi: 10.1007/s00203-016-1275-8. Epub 2016 Aug 9.

Abstract

A Gram-staining-negative, aerobic, rod-shaped, yellow-orange-pigmented, gliding bacterium, designated as strain ST2L12, was isolated from estuarine mangrove sediment from Matang Mangrove Forest, Perak, Malaysia. Strain ST2L12 grew at 15-39 °C, pH 6-8 and in 1-6 % (w/v) NaCl. This strain was able to degrade xylan and casein. 16S rRNA gene sequence analysis showed 95.3-92.8 % similarity to members of the genera Mangrovimonas, Meridianimaribacter, Sediminibacter, Gaetbulibacter and Hoppeia. Phylogenetic analysis indicated that it belonged to the family Flavobacteriaceae. Respiratory quinone present was menaquinone-6 (MK-6), and the DNA G+C content was 38.3 mol%. The predominant fatty acids were iso-C, iso-C, C and iso-C 3-OH. Moreover, previous genome comparison study showed that the genome of ST2L12 is 1.4 times larger compared to its closest relative, Mangrovimonas yunxiaonensis LYYY01. Phenotypic, fatty acid, 16S rRNA gene sequence and previous genome data indicate that strain ST2L12 represents a novel species of the genus Mangrovimonas in the family Flavobacteriaceae, for which the name Mangrovimonas xylaniphaga sp. nov. is proposed. The type strain of Mangrovimonas xylaniphaga is ST2L12 (=LMG 28914=JCM 30880).

摘要

从马来西亚霹雳州马当红树林的河口红树林沉积物中分离出一株革兰氏染色阴性、需氧、杆状、具有黄橙色色素、能滑行的细菌,命名为ST2L12菌株。ST2L12菌株在15-39℃、pH值6-8和1-6%(w/v)NaCl条件下生长。该菌株能够降解木聚糖和酪蛋白。16S rRNA基因序列分析表明,它与红树林单胞菌属、子午线海杆菌属、沉积物杆菌属、盖特布利杆菌属和霍佩亚菌属的成员有95.3-92.8%的相似性。系统发育分析表明它属于黄杆菌科。存在的呼吸醌为甲基萘醌-6(MK-6),DNA G+C含量为38.3 mol%。主要脂肪酸为异-C、异-C、C和异-C 3-OH。此外,先前的基因组比较研究表明,ST2L12的基因组比其最接近的亲缘种——云霞红树林单胞菌LYYY01大1.4倍。表型、脂肪酸、16S rRNA基因序列和先前的基因组数据表明,ST2L12菌株代表黄杆菌科红树林单胞菌属的一个新物种,为此提出了新名称嗜木聚糖红树林单胞菌(Mangrovimonas xylaniphaga sp. nov.)。嗜木聚糖红树林单胞菌的模式菌株为ST2L12(=LMG 28914=JCM 30880)。

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