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sp. nov.,一种与红海红树林中招潮蟹(短尾亚目,沙蟹科)鳃相关的新型细菌物种。

sp. nov., a novel bacterial species associated with the gills of the fiddler crab (Brachyura, Ocypodidae) from Red Sea mangroves.

机构信息

Red Sea Research Center (RSRC), Biological and Environmental Sciences and Engineering Division (BESE), King Abdullah University of Science and Technology (KAUST), Thuwal, 23955-6900, Saudi Arabia.

Dove Marine Laboratory, School of Natural and Environmental Sciences Newcastle University, Newcastle-Upon-Tyne, NE1 7RU, UK.

出版信息

Int J Syst Evol Microbiol. 2024 Jun;74(6). doi: 10.1099/ijsem.0.006415.

Abstract

Two bacteria, UG2_1 and UG2_2, were isolated from the gill tissues of the mangrove fiddler crab collected on the east coast of the Red Sea (Thuwal, Saudi Arabia). The cells are Gram-negative, rod-shaped, orange-pigmented, motile by gliding with no flagella, strictly aerobic, and grow at 20-37 °C (optimum, 28-35 °C), at pH 5.0-9.0 (optimum, pH 6.0-7.0), and with 1-11 % (w/v) NaCl (optimum, 2-4 %). They were positive for oxidase and catalase activity. Phylogenetic analysis based on 16S rRNA gene sequences indicated that isolates UG2_1 and UG2_2 belong to the genus , showing the highest similarity to HN-E26 (99.4 %). Phylogenomic analysis based on the whole genomes, independently using 49 and 120 concatenated genes, showed that strains UG2_1 and UG2_2 formed a monophyletic lineage in a different cluster from other type strain species within the genus . The genome sizes were 3.08 and 3.07 Mbp for UG2_1 and UG2_2, respectively, with a G+C content of 33.8 mol% for both strains. Values of average nucleotide identity and digital DNA-DNA hybridization between the strains and closely related species were 91.0 and 43.5 %, respectively. Chemotaxonomic analysis indicated that both strains had iso-C and iso-C G as dominant fatty acids, and the primary respiratory quinone was identified as MK-6. The major polar lipids comprised phosphatidylethanolamine, one unidentified glycolipid, one unidentified phospholipid, two unidentified aminolipids, and four unidentified lipids. Based on phylogenetic, phylogenomic, genome relatedness, phenotypic, and chemotaxonomical data, the two isolates represent a novel species within the genus , with the proposed name sp. nov., and the type strain UG2_1 (=KCTC 102158=DSM 117025).

摘要

两种细菌,UG2_1 和 UG2_2,从红海东海岸采集的红树林招潮蟹的鳃组织中分离出来。这些细胞呈革兰氏阴性,杆状,橙色,通过滑行运动,没有鞭毛,严格需氧,在 20-37°C(最佳温度为 28-35°C)、pH 值 5.0-9.0(最佳 pH 值为 6.0-7.0)和 1-11%(w/v)NaCl(最佳为 2-4%)下生长。它们氧化酶和过氧化氢酶活性均为阳性。基于 16S rRNA 基因序列的系统发育分析表明,分离株 UG2_1 和 UG2_2 属于 属,与 HN-E26(99.4%)的相似度最高。基于全基因组的系统发育基因组分析,分别使用 49 和 120 个串联基因,表明菌株 UG2_1 和 UG2_2 在一个不同的聚类中形成了一个单系谱系,与属内其他模式种不同。UG2_1 和 UG2_2 的基因组大小分别为 3.08 和 3.07 Mbp,G+C 含量分别为 33.8mol%。两株菌与密切相关的种之间的平均核苷酸同一性和数字 DNA-DNA 杂交值分别为 91.0%和 43.5%。化学分类分析表明,两株菌的优势脂肪酸均为 iso-C 和 iso-C G,主要呼吸醌为 MK-6。主要极性脂包括磷脂酰乙醇胺、一种未鉴定的糖脂、一种未鉴定的磷脂、两种未鉴定的胺脂和四种未鉴定的脂类。基于系统发育、系统基因组学、基因组相关性、表型和化学分类学数据,这两个分离株代表了属内的一个新种,命名为 sp. nov.,其模式菌株为 UG2_1(=KCTC 102158=DSM 117025)。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/09d3/11261673/53992d89cfca/ijsem-74-06415-g001.jpg

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