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sp. nov.,分离自岛屿土壤。

sp. nov., isolated from island soil.

机构信息

Department of Microbiology and Molecular Biology, College of Bioscience and Biotechnology, Chungnam National University, 99, Daehak-ro, Yuseong, Daejeon 34134, Republic of Korea.

Center for Eco-friendly New Materials, Korea Research Institute of Chemical Technology, 141, Gajeong-ro, Yuseong, Daejeon 34114, Republic of Korea.

出版信息

Int J Syst Evol Microbiol. 2023 Feb;73(1). doi: 10.1099/ijsem.0.005689.

Abstract

A Gram-positive, non-motile, pale yellow coloured actinobacterial strain designated MMS17-SY077 was isolated from island soil, and its taxonomic position was investigated using a polyphasic approach. Strain MMS17-SY077 grew optimally at 30 °C, at pH 7 and in the absence of NaCl on Reasoner's 2A agar. Based on the 16S rRNA gene sequence analysis, the strain was assigned to the genus of the family , and the most related species were DSM 16388 (98.8 % sequence similarity), UMS-62 (98.1 %) and DS-10 (97.8 %). Strain MMS17-SY077 formed a distinct cluster within the clade in the phylogenetic tree. Genome-based comparative analyses confirmed a clear distinction between the strain and neighbouring species, as the highest orthologous average nucleotide identity and digital DNA-DNA hybridization values with other related species were 77.2 and 21.4% respectively, which were far below the cutoffs for species distinction. The diagnostic polar lipids of MMS17-SY077 were diphosphatidylglycerol and phosphatidylglycerol, and unidentified glycolipids and an unidentified aminolipid were also present. The main isoprenoid quinones were menaquinones with 11 and 12 isoprene units (MK-11 and MK-12), and main fatty acids were anteiso-C (34.4 %) and iso-C (33.2 %). The whole-cell hydrolysates contained rhamnose, ribose and galactose as diagnostic sugars, and l-2,4-diaminobutyric acid as the major diamino acid. The DNA G+C content was 72.1 mol %. Based on phenotypic, chemotaxnomic and phylogenetic characterization, strain MMS17-SY077 should be classified as representing a new species of the genus , for which the name sp. nov. is proposed (type strain MMS17-SY077=KCTC 49423=LMG 31762).

摘要

一株革兰氏阳性、非运动性、浅黄色放线菌菌株 MMS17-SY077 从岛屿土壤中分离出来,采用多相分类法研究其分类地位。菌株 MMS17-SY077 在 30°C、pH7 和无 NaCl 的条件下在 Reasoner's 2A 琼脂上生长最佳。基于 16S rRNA 基因序列分析,该菌株被归为 科 的 属 ,最相关的种是 DSM 16388(98.8%序列相似性)、UMS-62(98.1%)和 DS-10(97.8%)。菌株 MMS17-SY077 在系统发育树的 分支中形成一个独特的聚类。基于基因组的比较分析证实了该菌株与相邻种之间的明显区别,因为与其他相关种的最高同源平均核苷酸同一性和数字 DNA-DNA 杂交值分别为 77.2%和 21.4%,远低于种间区别的截止值。MMS17-SY077 的诊断极性脂是双磷脂酰甘油和磷脂酰甘油,还有未鉴定的糖脂和未鉴定的氨基脂。主要的异戊二烯醌是十异戊烯醌 11 和 12(MK-11 和 MK-12),主要脂肪酸是 anteiso-C(34.4%)和 iso-C(33.2%)。全细胞水解物含有鼠李糖、核糖和半乳糖作为诊断糖,l-2,4-二氨基丁酸作为主要的二氨基酸。DNA G+C 含量为 72.1mol%。基于表型、化学分类和系统发育特征,菌株 MMS17-SY077 应归类为代表 属的一个新种,建议采用新种名 。(模式菌株 MMS17-SY077=KCTC 49423=LMG 31762)。

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