Hu Chao-Jian, Xian Wen-Dong, Lv Yi-Qing, Peng Cheng-Xiang, Shan Rong-Xu, Cheng Ze-Chang, Lv Qian, Tian Ye, Jiao Jian-Yu, Tan Sha, Li Wen-Jun
State Key Laboratory of Biocontrol, Guangdong Key Laboratory of Plant Resources and Southern Marine Science and Engineering Guangdong Laboratory (Zhuhai), School of Life Sciences, Sun Yat-Sen University, Guangzhou 510275, PR China.
School of Ecology, Sun Yat-Sen University, Guangzhou 510275, PR China.
Int J Syst Evol Microbiol. 2022 Dec;72(12). doi: 10.1099/ijsem.0.005627.
Two closely related, aerobic, Gram-stain-negative, motile, oval-shaped, non-endospore-forming, moderately thermophilic bacteria, designated strains SYSU G05006 and SYSU G05005, were isolated from a bioreactor enrichment and the original sample was collected from Rehai National Park, Tengchong, Yunnan Province, PR China. The results of phylogenetic analysis based on the 16S rRNA gene sequences indicated that these two strains were closely related to YIM 72346 (96.75 and 96.89 % sequence similarity, respectively). The whole genome size of strain SYSU G05006 was 3.87 Mbp with a DNA G+C content of 75.33 mol%. The average nucleotide identity (ANI based on the MUMmer algorithm≤90.31 % and ANI based on blast≤89.36 %) and digital DNA-DNA hybridization (≤35.10 %) values between strain SYSU G05006 and other members of the family were all lower than the threshold values recommended for distinguishing novel prokaryotic species. Optimal growth of the strain was observed at 55 °C and pH 6.0. Ubiquinone-10 was the predominant respiratory lipoquinone. The major cellular fatty acids included iso-C, C ω5, summed feature 5 and summed feature 7. The major polar lipids consisted of diphosphatidylglycerol, one unidentified aminolipid, phosphatidylglycerol, phosphatidylethanolamine, phosphatidylcholine, two unidentified phospholipids and two unidentified lipids. Based on results of phylogenetic analyses, comparative genomics and phenotypic characteristics, we describe a new species of the genus represented by strain SYSU G05006 (=KCTC 82831=MCCC 1K06125), for which we propose the name sp. nov.
从一个生物反应器富集物中分离出了两株密切相关的需氧革兰氏阴性、运动性、椭圆形、不形成芽孢、嗜温适度的细菌,分别命名为菌株SYSU G05006和SYSU G05005,原始样本采集自中国云南省腾冲热海国家公园。基于16S rRNA基因序列的系统发育分析结果表明,这两株菌株与YIM 72346密切相关(序列相似性分别为96.75%和96.89%)。菌株SYSU G05006的全基因组大小为3.87 Mbp,DNA G+C含量为75.33 mol%。菌株SYSU G05006与该科其他成员之间的平均核苷酸同一性(基于MUMmer算法的ANI≤90.31%,基于blast的ANI≤89.36%)和数字DNA-DNA杂交(≤35.10%)值均低于区分新原核生物物种推荐的阈值。该菌株在55°C和pH 6.0条件下观察到最佳生长。泛醌-10是主要的呼吸性脂醌。主要的细胞脂肪酸包括异-C、C ω5、总和特征5和总和特征7。主要的极性脂质由双磷脂酰甘油、一种未鉴定的氨基脂质、磷脂酰甘油、磷脂酰乙醇胺、磷脂酰胆碱、两种未鉴定的磷脂和两种未鉴定的脂质组成。基于系统发育分析、比较基因组学和表型特征的结果,我们描述了以菌株SYSU G05006(=KCTC 82831=MCCC 1K06125)为代表的该属的一个新物种,我们将其命名为sp. nov. 。