State Key Laboratory of Biocontrol, Guangdong Key Laboratory of Plant Resources and Southern Marine Science and Engineering Guangdong Laboratory (Zhuhai), School of Life Sciences, Sun Yat-Sen University, Guangzhou 510275, PR China.
School of Ecology, Sun Yat-Sen University, Guangzhou 510275, PR China.
Int J Syst Evol Microbiol. 2022 Feb;72(2). doi: 10.1099/ijsem.0.005265.
Three closely related, facultative anaerobic, Gram-stain-negative, twitching motile, short rod-shaped, non-endospore-forming, moderately thermophilic bacteria, designated strains SYSU G05001, SYSU G05003 and SYSU G05004, were isolated from a hot spring microbial mat, collected from Rehai National Park, Tengchong, Yunnan Province, south-western China. The results of phylogenetic analysis based on the 16S rRNA gene sequences indicated that these three strains were closely related to SE-1 (97.97, 98.18, 97.90 % sequence similarity). Whole genome sequencing and polyphasic taxonomic approach were used to determine the genomic profile and taxonomic status of the novel strain SYSU G05001. Cell growth occurred at 37-80 °C (optimum, 55 °C), pH 6.0-8.0 (optimum, pH 7.0) and with 0-3.0 % (w/v) NaCl (optimum, 1%). Thiosulfate enhanced cell growth. MK-8 was the predominant menaquinone. The major cellular fatty acids included iso-C, iso-C and anteiso-C. The major polar lipids were consisted of aminophospholipid, glycolipid and phospholipids. The whole genome of strain SYSU G05001 consisted of 2.55 Mbp and the DNA G+C content was 64.94 mol%. The average nucleotide identity (≤94.95 %) and digital DNA-DNA hybridization (≤62.3 %) values between strain SYSU G05001 and other members of the genus were all lower than the threshold values recommended for distinguishing novel prokaryotic species. On the basis of the presented polyphasic evidence and genotypic data, it is proposed that strain SYSU G05001 (=KCTC 82627=MCCC 1K06118) represents a novel species of the genus , for which the name sp. nov. is proposed.
从中国云南省西南部腾冲热海国家公园的温泉微生物垫中分离到三株密切相关的兼性厌氧、革兰氏阴性、扭动运动、短杆状、非内生孢子形成、中温细菌,分别命名为 SYSU G05001、SYSU G05003 和 SYSU G05004 菌株。基于 16S rRNA 基因序列的系统发育分析结果表明,这三株菌与 SE-1(97.97、98.18、97.90%序列相似性)密切相关。全基因组测序和多相分类方法用于确定新型 SYSU G05001 菌株的基因组特征和分类地位。细胞生长发生在 37-80°C(最佳,55°C),pH 值 6.0-8.0(最佳,pH 值 7.0)和 0-3.0%(w/v)NaCl(最佳,1%)。硫代硫酸盐增强细胞生长。MK-8 是主要的menaquinone。主要的细胞脂肪酸包括 iso-C、iso-C 和 anteiso-C。主要的极性脂类由氨基磷脂、糖脂和磷脂组成。SYSU G05001 菌株的全基因组由 2.55 Mbp 组成,DNA G+C 含量为 64.94mol%。与属内其他成员的平均核苷酸同一性(≤94.95%)和数字 DNA-DNA 杂交(≤62.3%)值均低于区分新型原核生物种的建议阈值。基于呈现的多相证据和基因型数据,建议 SYSU G05001 菌株(=KCTC 82627=MCCC 1K06118)代表属的一个新种,提议使用 sp. nov. 作为该新种的名称。