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新种,一种从温泉微生物垫中分离出的细菌。

sp. nov., a bacterium isolated from hot spring microbial mat.

机构信息

State Key Laboratory of Biocontrol, Guangdong Key Laboratory of Plant Resources and Southern Marine Science and Engineering Guangdong Laboratory (Zhuhai), School of Life Sciences, Sun Yat-Sen University, Guangzhou 510275, PR China.

School of Ecology, Sun Yat-Sen University, Guangzhou 510275, PR China.

出版信息

Int J Syst Evol Microbiol. 2024 Mar;74(3). doi: 10.1099/ijsem.0.006307.

Abstract

A Gram-stain-negative, non-endospore-forming, motile, short rod-shaped strain, designated SYSU G07232, was isolated from a hot spring microbial mat, sampled from Rehai National Park, Tengchong, Yunnan Province, south-western China. Strain SYSU G07232 grew at 25-50 °C (optimum, 37 °C), at pH 5.5-9.0 (optimum, pH 6.0) and tolerated NaCl concentrations up to 1.0 % (w/v). Phylogenetic analysis based on the 16S rRNA gene sequences revealed that strain SYSU G07232 showed closest genetic affinity with K106. The genomic features and taxonomic status of this strain were determined through whole-genome sequencing and a polyphasic approach. The predominant quinone of this strain was Q-10. Major cellular fatty acids comprised C cyclo 8 and summed feature 8. The whole-genome length of strain SYSU G07232 was 4.02 Mbp, and the DNA G+C content was 69.26 mol%. The average nucleotide identity (ANIm ≤84.85 % and ANIb ≤76.08  %) and digital DNA-DNA hybridization (≤ 21.9 %) values between strain SYSU G07232 and the reference species were lower than the threshold values recommended for distinguishing novel prokaryotic species. Thus, based on the provided phenotypic, phylogenetic, and genetic data, it is proposed that strain SYSU G07232 (=KCTC 8141=GDMCC 1.4178) be designated as representing a novel species within the genus , named sp. nov.

摘要

一株革兰氏阴性、非芽孢形成、能动、短杆状的菌株,被命名为 SYSU G07232,从中国云南省西南部腾冲热海国家公园的温泉微生物垫中分离得到。菌株 SYSU G07232 在 25-50°C(最佳温度为 37°C)、pH5.5-9.0(最佳 pH6.0)和耐受高达 1.0%(w/v)的 NaCl 浓度下生长。基于 16S rRNA 基因序列的系统发育分析表明,菌株 SYSU G07232 与 K106 具有最密切的遗传亲缘关系。通过全基因组测序和多相方法确定了该菌株的基因组特征和分类地位。该菌株的主要醌为 Q-10。主要细胞脂肪酸由 C 环 8 和总和特征 8 组成。菌株 SYSU G07232 的全基因组长度为 4.02 Mbp,DNA G+C 含量为 69.26 mol%。菌株 SYSU G07232 与参考种之间的平均核苷酸同一性(ANI≤84.85% 和 ANIb≤76.08%)和数字 DNA-DNA 杂交(≤21.9%)值低于区分新原核种的推荐阈值。因此,基于提供的表型、系统发育和遗传数据,建议将菌株 SYSU G07232(=KCTC 8141=GDMCC 1.4178)指定为属于属的一个新种,命名为 sp. nov.。

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