Bartlett Abigail, Padfield Daniel, Lear Luke, Bendall Richard, Vos Michiel
European Centre for Environment and Human Health, University of Exeter Medical School, Environment and Sustainability Institute, Penryn Campus, TR10 9FE, UK.
Kai Ping, Goonvrea, St Agnes, TR5 0NW, UK.
Microbiology (Reading). 2022 Dec;168(12). doi: 10.1099/mic.0.001269.
There exists an enormous diversity of bacteria capable of human infection, but no up-to-date, publicly accessible list is available. Combining a pragmatic definition of pathogenicity with an extensive search strategy, we report 1513 bacterial pathogens known to infect humans described pre-2021. Of these, 73 % were regarded as established (have infected at least three persons in three or more references) and 27 % as putative (fewer than three known cases). Pathogen species belong to 10 phyla and 24 classes scattered throughout the bacterial phylogeny. We show that new human pathogens are discovered at a rapid rate. Finally, we discuss how our results could be expanded to a database, which could provide a useful resource for microbiologists. Our list is freely available and archived on GitHub and Zenodo and we have provided walkthroughs to facilitate access and use.
能够感染人类的细菌种类繁多,但目前尚无最新的、可公开获取的列表。结合实用性的致病性定义和广泛的搜索策略,我们报告了2021年之前已知的1513种可感染人类的细菌病原体。其中,73%被视为已确定的病原体(在三篇或更多参考文献中感染过至少三个人),27%被视为推定的病原体(已知病例少于三例)。病原体种类属于10个门和24个纲,分布在整个细菌系统发育树中。我们表明,新的人类病原体正在以快速的速度被发现。最后,我们讨论了如何将我们的结果扩展为一个数据库,这可为微生物学家提供有用的资源。我们的列表可在GitHub和Zenodo上免费获取并存档,我们还提供了操作指南以方便访问和使用。