College of Bioinformatics Science and Technology, Harbin Medical University, Harbin 150081, China.
Institute of Opto-Electronics, Harbin Institute of Technology, Harbin 150001, China.
Int J Mol Sci. 2023 Jan 23;24(3):2244. doi: 10.3390/ijms24032244.
Drug repositioning aims to discover novel clinical benefits of existing drugs, is an effective way to develop drugs for complex diseases such as cancer and may facilitate the process of traditional drug development. Meanwhile, network-based computational biology approaches, which allow the integration of information from different aspects to understand the relationships between biomolecules, has been successfully applied to drug repurposing. In this work, we developed a new strategy for network-based drug repositioning against cancer. Combining the mechanism of action and clinical efficacy of the drugs, a cancer-related drug similarity network was constructed, and the correlation score of each drug with a specific cancer was quantified. The top 5% of scoring drugs were reviewed for stability and druggable potential to identify potential repositionable drugs. Of the 11 potentially repurposable drugs for non-small cell lung cancer (NSCLC), 10 were confirmed by clinical trial articles and databases. The targets of these drugs were significantly enriched in cancer-related pathways and significantly associated with the prognosis of NSCLC. In light of the successful application of our approach to colorectal cancer as well, it provides an effective clue and valuable perspective for drug repurposing in cancer.
药物重定位旨在发现现有药物的新的临床用途,是开发癌症等复杂疾病药物的有效方法,并且可能促进传统药物开发的进程。同时,基于网络的计算生物学方法可以整合来自不同方面的信息,以了解生物分子之间的关系,已成功应用于药物重定位。在这项工作中,我们开发了一种针对癌症的基于网络的药物重定位新策略。结合药物的作用机制和临床疗效,构建了一个与癌症相关的药物相似性网络,并量化了每种药物与特定癌症的相关性得分。对得分最高的 5%的药物进行了稳定性和可药性评估,以确定潜在的可重定位药物。在 11 种可能用于非小细胞肺癌 (NSCLC) 的可重新定位药物中,有 10 种在临床试验文章和数据库中得到了证实。这些药物的靶点在癌症相关途径中显著富集,并且与 NSCLC 的预后显著相关。鉴于我们的方法在结直肠癌中的成功应用,它为癌症药物重定位提供了有效的线索和有价值的视角。