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使用综合生物信息学方法鉴定和分析与. 相关的胃癌关键基因。 (原文中“.”处信息缺失)

Identification and Analysis of Crucial Genes in . -Associated Gastric Cancer Using an Integrated Bioinformatics Approach.

作者信息

Ding Wei, Jiang Huaji, Ye Nianyuan, Zhuang Ling, Yuan Zhiping, Tan Yulin, Xue Wenbo, Xu Xuezhong

机构信息

Department of General Surgery, Wujin Hospital Affiliated to Jiangsu University, Changzhou 213017, China.

Department of General Surgery, The Wujin Clinical College of Xuzhou Medical University, Changzhou 213017, China.

出版信息

J Oncol. 2023 Feb 1;2023:8538240. doi: 10.1155/2023/8538240. eCollection 2023.

Abstract

BACKGROUND

The relationship between infection and gastric cancer (GC) has been widely studied, and is considered as the main factor. Utilizing bioinformatics analysis, this study examined gene signatures related to progressing -associated GC.

MATERIALS AND METHODS

The dataset GSE13195 was chosen to search for abnormally expressed genes in -associated GC and normal tissues. The TCGA-STAD database was chosen to verify the expression of key genes in GC and normal tissues.

RESULTS

In GSE13195, a total of 332 differential expression genes (DEGs) were screened. The results of weighted gene co-expression network analysis showed that the light cyan, plum2, black, and magenta4 modules were associated with stages (3, 2, and 4), while the orangered4, salmon2, pink, and navajowhite2 modules were correlated with lymph node metastasis (3, 2, and 0). Based on the results of DEGs and hub genes, a total of 7 key genes (ADAM28, FCER1G, MRPL14, SOSTDC1, TYROBP, C1QC, and 3) were screened out. These gene mRNA levels were able to distinguish between normal and -associated GC tissue using receiver operating characteristic curves. After transcriptional level verification and survival analysis, ADAM28 and C1QC were excluded. An immune infiltration study revealed that key genes were involved in regulating the infiltration levels of cells associated with innate immune response, antigen presentation process, humoral immune response, or cell-mediated immune response. In addition, drugs targeting FCER1G and TYROBP have been approved and are under investigation.

CONCLUSION

Our study identified five key genes involved in -associated GC tumorigenesis. Patients with higher levels of 3 expression had a poorer prognosis than those with lower levels. In addition, these key genes may serve as biomarkers and therapeutic targets for -associated GC diagnosis, targeted therapy, and immunotherapy in the future.

摘要

背景

感染与胃癌(GC)之间的关系已得到广泛研究,并被视为主要因素。本研究利用生物信息学分析,检测了与进展相关的胃癌相关基因特征。

材料与方法

选择数据集GSE13195来搜索胃癌相关组织和正常组织中异常表达的基因。选择TCGA-STAD数据库来验证关键基因在胃癌组织和正常组织中的表达。

结果

在GSE13195中,共筛选出332个差异表达基因(DEG)。加权基因共表达网络分析结果显示,浅青色、李子2、黑色和品红色4模块与分期(3、2和4期)相关,而橙红色4、鲑鱼2、粉色和纳瓦霍白2模块与淋巴结转移(3、2和0)相关。基于DEG和枢纽基因的结果,共筛选出7个关键基因(ADAM28、FCER1G、MRPL14、SOSTDC1、TYROBP、C1QC和3)。这些基因的mRNA水平能够使用受试者工作特征曲线区分正常组织和胃癌相关组织。经过转录水平验证和生存分析,排除了ADAM28和C1QC。免疫浸润研究表明,关键基因参与调节与先天免疫反应、抗原呈递过程、体液免疫反应或细胞介导免疫反应相关的细胞浸润水平。此外,针对FCER1G和TYROBP的药物已获批准并正在研究中。

结论

我们的研究确定了五个参与胃癌相关肿瘤发生的关键基因。3表达水平较高的患者预后比水平较低的患者差。此外,这些关键基因未来可能作为胃癌相关诊断、靶向治疗和免疫治疗的生物标志物和治疗靶点。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3867/9908346/33866e68e5b8/JO2023-8538240.001.jpg

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