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高效转染大西洋鲑鱼原代肝细胞用于功能测定和基因编辑。

Efficient transfection of Atlantic salmon primary hepatocyte cells for functional assays and gene editing.

机构信息

Department of Animal and Aquacultural Sciences, Faculty of Biosciences, Centre for Integrative Genetics (CIGENE), Norwegian University of Life Sciences, Ås, 1433, Norway.

AquaGen AS, P. O. 1240, Trondheim, 7462, Norway.

出版信息

G3 (Bethesda). 2023 Apr 11;13(4). doi: 10.1093/g3journal/jkad039.

DOI:10.1093/g3journal/jkad039
PMID:36786483
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC10085798/
Abstract

The expansion of genomic resources for Atlantic salmon over the past half decade has enabled efficient interrogation of genetic traits by large-scale correlation of genotype to phenotype. Moving from correlation to causation will require genotype-phenotype relationships to be tested experimentally in a cost-efficient and cell context-relevant manner. To enable such future experiments, we have developed a method for the isolation and genetic manipulation of primary hepatocytes from Atlantic salmon for use in heterologous expression, reporter assay, and gene editing experiments. We chose the liver as the tissue of interest because it is the metabolic hub and many current Atlantic salmon research projects focus on understanding metabolic processes to improve traits such as the growth rate, total fat content, and omega-3 content. We find that isolated primary hepatocytes are optimally transfected with both plasmid and ribonucleoprotein using a Neon electroporator at 1,400 V, 10 ms, and 2 pulses. Transfection efficiency with plasmid and cutting efficiency with ribonucleoprotein were optimally 46% and 60%, respectively. We also demonstrate a 26 times increase in luciferase expression under the promoter of the key liver metabolic gene, elovl5b, compared to an empty vector, in line with expected liver-specific expression. Taken together, this work provides a valuable resource enabling transfection and gene editing experiments in a context-relevant and cost-effective system.

摘要

在过去的五年中,大西洋鲑鱼基因组资源的扩展使得通过大规模的基因型与表型相关性研究来高效探究遗传特征成为可能。要实现从相关性到因果关系的转变,需要以经济高效和细胞相关的方式对基因型-表型关系进行实验测试。为了实现未来的这些实验,我们开发了一种从大西洋鲑鱼中分离和遗传操作原代肝细胞的方法,用于异源表达、报告基因检测和基因编辑实验。我们选择肝脏作为感兴趣的组织,因为它是代谢中心,并且许多当前的大西洋鲑鱼研究项目都集中在理解代谢过程上,以提高生长速度、总脂肪含量和欧米伽-3 含量等特征。我们发现,使用 Neon 电穿孔仪在 1400V、10ms 和 2 个脉冲的条件下,原代肝细胞可以被质粒和核糖核蛋白同时最佳转染。质粒的转染效率和核糖核蛋白的切割效率分别最佳可达 46%和 60%。我们还证明,在关键肝脏代谢基因 elovl5b 的启动子下,与空载体相比,荧光素酶的表达增加了 26 倍,符合预期的肝脏特异性表达。综上所述,这项工作提供了一个有价值的资源,使在相关和具有成本效益的系统中进行转染和基因编辑实验成为可能。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d8df/10085798/f60552cee7bb/jkad039f3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d8df/10085798/ce8c203dc529/jkad039f1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d8df/10085798/206b6e811c67/jkad039f2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d8df/10085798/f60552cee7bb/jkad039f3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d8df/10085798/ce8c203dc529/jkad039f1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d8df/10085798/206b6e811c67/jkad039f2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d8df/10085798/f60552cee7bb/jkad039f3.jpg

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Inference of CRISPR Edits from Sanger Trace Data.从 Sanger 测序数据推断 CRISPR 编辑。
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