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热激和冷激处理后丽蝇蛹集金小蜂(鞘翅目:金小蜂科-蛹集金小蜂族)的比较转录组分析。

Comparative transcriptome analysis of Callosobruchus chinensis (L.) (Coleoptera: Chrysomelidae-Bruchinae) after heat and cold stress exposure.

机构信息

College of Plant Protection, Shanxi Agricultural University, Taigu, Shanxi, 030801, China.

College of Agricultural Economics and Management, Shanxi Agricultural University, Taigu, Shanxi, 030801, China.

出版信息

J Therm Biol. 2023 Feb;112:103479. doi: 10.1016/j.jtherbio.2023.103479. Epub 2023 Jan 14.

Abstract

Callosobruchus chinensis is regarded as one of the cosmopolitan pests of legume crops and can cause tremendous losses to a variety of beans. This study focused on comparative transcriptome analyses of C. chinensis exposed to 45 °C (heat stress), 27 °C (ambient temperature) and -3 °C (cold stress) for 3 h to investigate the gene differences and underlying molecular mechanisms. There were 402 and 111 differentially expressed genes (DEGs) identified in the heat and cold stress treatments, respectively. "cell process", "cell" and "binding" were the main enriched functions and biological processes revealed by gene ontology (GO) analysis. The clusters of orthologous genes (COG) showed that DEGs were assigned to the categories: "posttranslational modification, protein turnover, chaperones", "lipid transport and metabolism", and "general function prediction only". With respect to the Kyoto Encyclopedia of Genes and Genomes (KEGG), the "longevity regulating pathway-multiple species", "carbon metabolism", "peroxisome", "protein processing in endoplasmic", "glyoxylate and dicarboxylate metabolism" pathways were significantly enriched. The annotation and enrichment analysis revealed that genes encoding heat shock proteins (Hsps) and cuticular proteins were significantly upregulated under high and low-temperature stresses, respectively. In addition, some DEGs encoding "Protein lethal essential for life", "Reverse transcriptase", "DnaJ domain", "Cytochrome" and "Zinc finger protein" were also upregulated to varying degrees. Transcriptomic data were validated using qRT‒PCR, which confirmed that they were consistent. In this paper, the temperature tolerance of C. chinensis adults was evaluated and the results showed that female adults were more sensitive to heat and cold stress than males, and the upregulation of heat shock protein and epidermal protein was the largest in DEGs after heat and cold stress, respectively. These findings provide a reference for further understanding the biological characteristics of C. chinensis adults and the molecular mechanisms underlying the response to low and high temperatures.

摘要

斑蝥是一种世界性的豆类作物害虫,可对各种豆类造成巨大损失。本研究聚焦于 45°C(热应激)、27°C(环境温度)和-3°C(冷应激)下处理 3 小时的斑蝥进行比较转录组分析,以研究基因差异和潜在的分子机制。在热应激和冷应激处理中分别鉴定出 402 个和 111 个差异表达基因(DEGs)。基因本体论(GO)分析显示,主要富集功能和生物过程是“细胞过程”、“细胞”和“结合”。直系同源基因簇(COG)显示 DEGs 被分配到以下类别:“翻译后修饰、蛋白质周转、伴侣”、“脂质运输和代谢”和“仅一般功能预测”。就京都基因与基因组百科全书(KEGG)而言,“长寿调节途径-多物种”、“碳代谢”、“过氧化物酶体”、“内质网蛋白质加工”、“乙醛酸和二羧酸代谢”途径显著富集。注释和富集分析表明,高温和低温胁迫下热休克蛋白(Hsps)和表皮蛋白基因编码的基因显著上调。此外,一些 DEGs 编码的“对生命至关重要的致死蛋白”、“逆转录酶”、“DnaJ 结构域”、“细胞色素”和“锌指蛋白”也被不同程度地上调。使用 qRT-PCR 对转录组数据进行验证,结果表明它们是一致的。在本文中,评估了斑蝥成虫的温度耐受性,结果表明雌成虫对热和冷应激比雄成虫更敏感,热和冷应激后 Hsp 和表皮蛋白的上调幅度最大。这些发现为进一步了解斑蝥成虫的生物学特性以及对低温和高温的反应的分子机制提供了参考。

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