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二维琼脂糖凝胶电泳分析线粒体DNA复制

Analysis of Mitochondrial DNA Replication by Two-Dimensional Agarose Gel Electrophoresis.

作者信息

Goffart Steffi, Pohjoismäki Jaakko

机构信息

University of Eastern Finland, Department of Environmental and Biological Sciences, Joensuu, Finland.

出版信息

Methods Mol Biol. 2023;2615:241-266. doi: 10.1007/978-1-0716-2922-2_18.

DOI:10.1007/978-1-0716-2922-2_18
PMID:36807797
Abstract

Two-dimensional neutral/neutral agarose gel electrophoresis (2D-AGE) has been employed for nearly two decades in the analysis of replication and maintenance processes of animal mitochondrial DNA, but the method's potential has not been fully exploited. Here, we describe the various steps involved in this technique, from DNA isolation, to two-dimensional neutral/neutral agarose gel electrophoresis (2D-AGE), Southern hybridization and interpretation. We also provide examples of the applicability of 2D-AGE to investigate the different features of mtDNA maintenance and regulation.

摘要

二维中性/中性琼脂糖凝胶电泳(2D-AGE)已被用于动物线粒体DNA复制和维持过程分析近二十年,但该方法的潜力尚未得到充分发掘。在此,我们描述了这项技术所涉及的各个步骤,从DNA分离到二维中性/中性琼脂糖凝胶电泳(2D-AGE)、Southern杂交及结果解读。我们还提供了二维中性/中性琼脂糖凝胶电泳(2D-AGE)用于研究线粒体DNA维持和调控不同特征的适用性示例。

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本文引用的文献

1
Neutral-Neutral 2-Dimensional Agarose Gel Electrophoresis for Visualization of E. coli DNA Replication Structures.用于可视化大肠杆菌DNA复制结构的中性-中性二维琼脂糖凝胶电泳
Methods Mol Biol. 2020;2119:61-72. doi: 10.1007/978-1-0716-0323-9_5.
2
A rolling circle replication mechanism produces multimeric lariats of mitochondrial DNA in Caenorhabditis elegans.滚环复制机制产生秀丽隐杆线虫线粒体DNA的多聚体套索结构。
PLoS Genet. 2015 Feb 18;11(2):e1004985. doi: 10.1371/journal.pgen.1004985. eCollection 2015 Feb.
3
Analysis of replication intermediates indicates that Drosophila melanogaster mitochondrial DNA replicates by a strand-coupled theta mechanism.
复制中间体分析表明,黑腹果蝇的线粒体 DNA 通过链偶联的θ机制进行复制。
PLoS One. 2013;8(1):e53249. doi: 10.1371/journal.pone.0053249. Epub 2013 Jan 4.
4
Strand invasion structures in the inverted repeat of Candida albicans mitochondrial DNA reveal a role for homologous recombination in replication.酿酒酵母线粒体 DNA 反向重复序列中的链侵入结构揭示了同源重组在复制中的作用。
Mol Cell. 2010 Sep 24;39(6):851-61. doi: 10.1016/j.molcel.2010.09.002.
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Human heart mitochondrial DNA is organized in complex catenated networks containing abundant four-way junctions and replication forks.人类心脏线粒体DNA以复杂的连环网络形式组织,其中包含丰富的四向连接点和复制叉。
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Twinkle mutations associated with autosomal dominant progressive external ophthalmoplegia lead to impaired helicase function and in vivo mtDNA replication stalling.与常染色体显性进行性眼外肌麻痹相关的Twinkle突变导致解旋酶功能受损和体内线粒体DNA复制停滞。
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7
The mitochondrial transcription termination factor mTERF modulates replication pausing in human mitochondrial DNA.线粒体转录终止因子mTERF调节人类线粒体DNA的复制暂停。
Nucleic Acids Res. 2007;35(19):6458-74. doi: 10.1093/nar/gkm676. Epub 2007 Sep 20.
8
DNA recombination activity in soybean mitochondria.大豆线粒体中的DNA重组活性。
J Mol Biol. 2006 Feb 17;356(2):288-99. doi: 10.1016/j.jmb.2005.11.070. Epub 2005 Dec 9.
9
Two-dimensional agarose gel analysis of DNA replication intermediates.DNA复制中间体的二维琼脂糖凝胶分析
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10
A bidirectional origin of replication maps to the major noncoding region of human mitochondrial DNA.一个双向复制起点定位于人类线粒体DNA的主要非编码区域。
Mol Cell. 2005 Jun 10;18(6):651-62. doi: 10.1016/j.molcel.2005.05.002.