Department of Mathematical Sciences, New Jersey Institute of Technology, Newark, New Jersey.
Biophys J. 2022 Dec 6;121(23):4569-4584. doi: 10.1016/j.bpj.2022.10.033. Epub 2022 Oct 29.
Ca-dependent cell processes, such as neurotransmitter or endocrine vesicle fusion, are inherently stochastic due to large fluctuations in Ca channel gating, Ca diffusion, and Ca binding to buffers and target sensors. However, previous studies revealed closer-than-expected agreement between deterministic and stochastic simulations of Ca diffusion, buffering, and sensing if Ca channel gating is not Ca dependent. To understand this result more fully, we present a comparative study complementing previous work, focusing on Ca dynamics downstream of Ca channel gating. Specifically, we compare deterministic (mean-field/mass-action) and stochastic simulations of vesicle exocytosis latency, quantified by the probability density of the first-passage time (FPT) to the Ca-bound state of a vesicle fusion sensor, following a brief Ca current pulse. We show that under physiological constraints, the discrepancy between FPT densities obtained using the two approaches remains small even if as few as ∼50 Ca ions enter per single channel-vesicle release unit. Using a reduced two-compartment model for ease of analysis, we illustrate how this close agreement arises from the smallness of correlations between fluctuations of the reactant molecule numbers, despite the large magnitude of fluctuation amplitudes. This holds if all relevant reactions are heteroreaction between molecules of different species, as is the case for bimolecular Ca binding to buffers and downstream sensor targets. In this case, diffusion and buffering effectively decorrelate the state of the Ca sensor from local Ca fluctuations. Thus, fluctuations in the Ca sensor's state underlying the FPT distribution are only weakly affected by the fluctuations in the local Ca concentration around its average, deterministically computable value.
依赖 Ca 的细胞过程,如神经递质或内分泌囊泡融合,由于 Ca 通道门控、Ca 扩散以及 Ca 与缓冲剂和靶传感器结合的大波动,本质上是随机的。然而,如果 Ca 通道门控不是依赖 Ca 的,先前的研究表明,Ca 扩散、缓冲和传感的确定性和随机模拟之间的一致性比预期的更为接近。为了更全面地理解这一结果,我们提出了一项补充先前工作的比较研究,重点是 Ca 通道门控下游的 Ca 动力学。具体来说,我们比较了囊泡胞吐潜伏期的确定性(平均场/质量作用)和随机模拟,通过囊泡融合传感器的 Ca 结合状态的首次通过时间(FPT)的概率密度来量化,在短暂的 Ca 电流脉冲之后。我们表明,在生理约束下,即使每个单个通道-囊泡释放单元中只有 ∼50 个 Ca 离子进入,使用两种方法获得的 FPT 密度之间的差异仍然很小。使用简化的两隔间模型进行易于分析,我们说明了尽管波动幅度很大,但由于反应物分子数波动之间的相关性很小,如何产生这种紧密的一致性。如果所有相关反应都是不同物种分子之间的异分子反应,就像双分子 Ca 与缓冲剂和下游传感器靶标结合一样,情况就是如此。在这种情况下,扩散和缓冲有效地使 Ca 传感器的状态与其局部 Ca 波动解相关。因此,FPT 分布下 Ca 传感器状态的波动仅受其平均可确定性计算的局部 Ca 浓度周围波动的微弱影响。