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分子动力学模拟如何助力基因药物?

How can molecular dynamics simulations assist with gene medicines?

作者信息

Uludağ Hasan, Tang Tian

机构信息

Department of Chemical and Materials Engineering, Faculty of Engineering, University of Alberta, Edmonton, Canada.

Department of Biomedical Engineering, Faculty of Medicine & Dentistry, University of Alberta, Edmonton, Canada.

出版信息

Biomater Biosyst. 2021 Feb 24;2:100014. doi: 10.1016/j.bbiosy.2021.100014. eCollection 2021 Jun.

DOI:10.1016/j.bbiosy.2021.100014
PMID:36824656
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC9934421/
Abstract

Molecular Dynamics (MD) simulations can provide a glimpse of complex atomistic and molecular events at the interface of biomaterials and biosystems. Gene therapy efforts that deploy biomaterial mediated delivery of nucleic acids could benefit immensely from such MD simulations. These efforts most commonly employ supramolecular assembly whose structure is highly dynamic and influential in the final outcomes. By careful analysis of the behavior of constituting elements, one can visualize the assembly as it makes its way though biosystems. We highlight the beneficial information to be gained from MD studies in this short perspective and outline a vision for future activity in the field.

摘要

分子动力学(MD)模拟能够让人一窥生物材料与生物系统界面处复杂的原子和分子事件。利用生物材料介导核酸递送的基因治疗工作可能会从这类MD模拟中受益匪浅。这些工作最常采用超分子组装,其结构高度动态且对最终结果有重要影响。通过仔细分析构成要素的行为,人们可以可视化超分子组装在生物系统中的行进过程。在这个简短的观点中,我们强调了从MD研究中可获得的有益信息,并概述了该领域未来活动的愿景。

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本文引用的文献

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Recent developments in empirical atomistic force fields for nucleic acids and applications to studies of folding and dynamics.近年来经验原子力场在核酸中的发展及其在折叠和动力学研究中的应用。
Curr Opin Struct Biol. 2021 Apr;67:9-17. doi: 10.1016/j.sbi.2020.08.003. Epub 2020 Sep 18.
2
Molecular-Level Insight into the Interactions of DNA/Polycation Complexes with Model Cell Membranes.分子水平上深入研究 DNA/聚阳离子复合物与模型细胞膜的相互作用。
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Mechanistic insights into the role of glycosaminoglycans in delivery of polymeric nucleic acid nanoparticles by molecular dynamics simulations.通过分子动力学模拟研究糖胺聚糖在聚合物核酸纳米颗粒传递中的作用机制。
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Nucleic acid combinations: A new frontier for cancer treatment.核酸组合:癌症治疗的新前沿。
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