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深海沉积物来源微生物的生物活性和代谢组学研究揭示了 PS108-62 中新型的 PKS-NRPS 大环内酯化合物

Bioactivity and Metabolome Mining of Deep-Sea Sediment-Derived Microorganisms Reveal New Hybrid PKS-NRPS Macrolactone from PS108-62.

机构信息

GEOMAR Centre for Marine Biotechnology (GEOMAR-Biotech), Research Unit Marine Natural Products Chemistry, GEOMAR Helmholtz Centre for Ocean Research Kiel, Am Kiel-Kanal 44, 24106 Kiel, Germany.

Centro Interdisciplinar de Química e Bioloxía (CICA), Facultade de Ciencias, Universidade de Coruña, 15071 Coruna, Spain.

出版信息

Mar Drugs. 2023 Jan 28;21(2):95. doi: 10.3390/md21020095.

DOI:10.3390/md21020095
PMID:36827136
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC9961484/
Abstract

Despite low temperatures, poor nutrient levels and high pressure, microorganisms thrive in deep-sea environments of polar regions. The adaptability to such extreme environments renders deep-sea microorganisms an encouraging source of novel, bioactive secondary metabolites. In this study, we isolated 77 microorganisms collected by a remotely operated vehicle from the seafloor in the Fram Strait, Arctic Ocean (depth of 2454 m). Thirty-two bacteria and six fungal strains that represented the phylogenetic diversity of the isolates were cultured using an One-Strain-Many-Compounds (OSMAC) approach. The crude EtOAc extracts were tested for antimicrobial and anticancer activities. While antibacterial activity against methicillin-resistant (MRSA) and was common for many isolates, only two bacteria displayed anticancer activity, and two fungi inhibited the pathogenic yeast . Due to bioactivity against and rich chemical diversity based on molecular network-based untargeted metabolomics, PS108-62 was selected for an in-depth chemical investigation. A chemical work-up of the SPE-fractions of its dichloromethane subextract led to the isolation of a new PKS-NRPS hybrid macrolactone, versicolide A (), a new quinazoline (-)-isoversicomide A (), as well as three known compounds, burnettramic acid A (), cyclopenol () and cyclopenin (). Their structures were elucidated by a combination of HRMS, NMR, [α], FT-IR spectroscopy and computational approaches. Due to the low amounts obtained, only compounds and could be tested for bioactivity, with inhibiting the growth of (IC 7.2 µg/mL). These findings highlight, on the one hand, the vast potential of the genus to produce novel chemistry, particularly from underexplored ecological niches such as the Arctic deep sea, and on the other, the importance of untargeted metabolomics for selection of marine extracts for downstream chemical investigations.

摘要

尽管温度低、营养水平低、压力大,但微生物在极地深海环境中仍能茁壮成长。它们对极端环境的适应性使深海微生物成为新型生物活性次生代谢物的有希望的来源。在这项研究中,我们从北极弗拉姆海峡海底(深度 2454 米)使用远程操作车辆采集了 77 种微生物,并对其进行了分离。采用单菌多化合物(OSMAC)方法培养了 32 株细菌和 6 株真菌菌株,以代表分离物的系统发育多样性。用粗 EtOAc 提取物进行了抗菌和抗癌活性测试。尽管许多分离物对耐甲氧西林金黄色葡萄球菌(MRSA)和 都具有抗菌活性,但只有两种细菌具有抗癌活性,两种真菌抑制了致病性酵母 。由于对 和丰富的化学多样性基于基于分子网络的非靶向代谢组学,选择 PS108-62 进行深入的化学研究。对其二氯甲烷亚提取物的 SPE 馏分进行化学处理,导致分离出一种新的 PKS-NRPS 杂合大环内酯 versicolide A (),一种新的喹唑啉(-)异versicomide A (),以及三种已知化合物,burnettramic acid A (),cyclopenol ()和 cyclopenin ()。通过 HRMS、NMR、[α]、FT-IR 光谱和计算方法的组合阐明了它们的结构。由于获得的量低,仅对化合物 和 进行了生物活性测试,化合物 抑制 (IC 7.2 µg/mL)的生长。这些发现一方面强调了属 的巨大潜力,可以产生新型化学物质,特别是来自北极深海等未充分探索的生态位,另一方面强调了非靶向代谢组学对于选择海洋提取物进行下游化学研究的重要性。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b57f/9961484/f05b65716b95/marinedrugs-21-00095-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b57f/9961484/d42ee40b868a/marinedrugs-21-00095-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b57f/9961484/92ea65d87c8a/marinedrugs-21-00095-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b57f/9961484/3fa0878aab51/marinedrugs-21-00095-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b57f/9961484/802d40124aa8/marinedrugs-21-00095-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b57f/9961484/f05b65716b95/marinedrugs-21-00095-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b57f/9961484/d42ee40b868a/marinedrugs-21-00095-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b57f/9961484/92ea65d87c8a/marinedrugs-21-00095-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b57f/9961484/3fa0878aab51/marinedrugs-21-00095-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b57f/9961484/802d40124aa8/marinedrugs-21-00095-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b57f/9961484/f05b65716b95/marinedrugs-21-00095-g005.jpg

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