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运用计算机模拟方法研究 Rv1417 和 Rv2617c 跨膜蛋白及其与尼古丁衍生物的相互作用,作为 Erp 毒力相关因子潜在抑制剂。

Study of the Rv1417 and Rv2617c Membrane Proteins and Their Interactions with Nicotine Derivatives as Potential Inhibitors of Erp Virulence-Associated Factor in : An In Silico Approach.

机构信息

Centro de Investigación en Ingeniería Molecular-CIIM, Universidad Católica de Santa María, Urb. San José s/n, Umacollo, Arequipa 04013, Peru.

Doctorado en Fisicoquímica Molecular, Facultad de Ciencias Exactas, Universidad Andres Bello, Santiago de Chile 8370134, Chile.

出版信息

Biomolecules. 2023 Jan 28;13(2):248. doi: 10.3390/biom13020248.

DOI:10.3390/biom13020248
PMID:36830617
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC9953637/
Abstract

The increasing emergence of (Mtb) strains resistant to traditional anti-tuberculosis drugs has alarmed health services worldwide. The search for new therapeutic targets and effective drugs that counteract the virulence and multiplication of Mtb represents a challenge for the scientific community. Several studies have considered the gene a possible therapeutic target in the last two decades, since its disruption negatively impacts Mtb multiplication. This gene encodes the exported repetitive protein (Erp), which is located in the cell wall of Mtb. In vitro studies have shown that the Erp protein interacts with two putative membrane proteins, Rv1417 and Rv2617c, and the impairment of their interactions can decrease Mtb replication. In this study, we present five nicotine analogs that can inhibit the formation of heterodimers and trimers between these proteins. Through DFT calculations, molecular dynamics, docking, and other advanced in silico techniques, we have analyzed the molecular complexes, and show the effect these compounds have on protein interactions. The results show that four of these analogs can be possible candidates to counteract the pathogenicity of Mtb. This study aims to combine research on the Erp protein as a therapeutic target in the search for new drugs that serve to create new therapies against tuberculosis disease.

摘要

(Mtb)菌株对传统抗结核药物的耐药性不断增加,这引起了全球卫生服务部门的警惕。寻找新的治疗靶点和有效药物来对抗 Mtb 的毒力和繁殖是科学界面临的挑战。在过去的二十年中,已有几项研究将 基因视为可能的治疗靶点,因为其失活会对 Mtb 的繁殖产生负面影响。该基因编码的是分泌性重复蛋白(Erp),它位于 Mtb 的细胞壁中。体外研究表明,Erp 蛋白与两种假定的膜蛋白 Rv1417 和 Rv2617c 相互作用,破坏它们的相互作用可以降低 Mtb 的复制。在这项研究中,我们提出了五种可以抑制这些蛋白形成异二聚体和三聚体的烟碱类似物。通过 DFT 计算、分子动力学、对接和其他先进的计算技术,我们分析了分子复合物,并展示了这些化合物对蛋白相互作用的影响。结果表明,其中四种类似物可能是对抗 Mtb 致病性的候选药物。这项研究旨在将 Erp 蛋白作为治疗靶点的研究与寻找新的药物结合起来,以创造新的结核病治疗方法。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8cfd/9953637/dfb3ff8c1ea2/biomolecules-13-00248-g007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8cfd/9953637/413ec893ea45/biomolecules-13-00248-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8cfd/9953637/8d31f0db38c5/biomolecules-13-00248-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8cfd/9953637/b58a6ed22fe4/biomolecules-13-00248-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8cfd/9953637/6aad9ab056fe/biomolecules-13-00248-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8cfd/9953637/150cfdf53f27/biomolecules-13-00248-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8cfd/9953637/08fb88aa3e64/biomolecules-13-00248-g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8cfd/9953637/dfb3ff8c1ea2/biomolecules-13-00248-g007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8cfd/9953637/413ec893ea45/biomolecules-13-00248-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8cfd/9953637/8d31f0db38c5/biomolecules-13-00248-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8cfd/9953637/b58a6ed22fe4/biomolecules-13-00248-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8cfd/9953637/6aad9ab056fe/biomolecules-13-00248-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8cfd/9953637/150cfdf53f27/biomolecules-13-00248-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8cfd/9953637/08fb88aa3e64/biomolecules-13-00248-g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8cfd/9953637/dfb3ff8c1ea2/biomolecules-13-00248-g007.jpg

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