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昆虫基因组结构演化的时空调控模式。

Tempo and Mode of Genome Structure Evolution in Insects.

机构信息

Department of Biology, Texas A&M University, College Station, TX 77843, USA.

Interdisciplinary Program in Ecology and Evolutionary Biology, Texas A&M University, College Station, TX 77843, USA.

出版信息

Genes (Basel). 2023 Jan 28;14(2):336. doi: 10.3390/genes14020336.

DOI:10.3390/genes14020336
PMID:36833264
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC9957073/
Abstract

The division of the genome into discrete chromosomes is a fundamental characteristic of eukaryotic life. Insect taxonomists' early adoption of cytogenetics has led to an incredible amount of data describing genome structure across insects. In this article, we synthesize data from thousands of species and use biologically realistic models to infer the tempo and mode of chromosome evolution among insect orders. Our results show that orders vary dramatically in the overall rate of chromosome number evolution (a proxy of genome structural stability) and the pattern of evolution (e.g., the balance between fusions and fissions). These findings have important implications for our understanding of likely modes of speciation and offer insight into the most informative clades for future genome sequencing.

摘要

基因组划分为离散的染色体是真核生物的一个基本特征。昆虫分类学家早期采用细胞遗传学,导致了大量描述昆虫基因组结构的数据。在本文中,我们综合了数千个物种的数据,并使用生物学上合理的模型来推断昆虫目之间染色体进化的速度和模式。我们的结果表明,目之间在染色体数量进化的总体速率(基因组结构稳定性的一个指标)和进化模式(例如,融合和裂变之间的平衡)方面存在显著差异。这些发现对我们理解可能的物种形成模式具有重要意义,并为未来基因组测序提供了最有信息的进化枝的见解。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/26f2/9957073/2e5f97f5cfe4/genes-14-00336-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/26f2/9957073/c9d1b4c36563/genes-14-00336-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/26f2/9957073/26546a45d172/genes-14-00336-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/26f2/9957073/2e5f97f5cfe4/genes-14-00336-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/26f2/9957073/c9d1b4c36563/genes-14-00336-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/26f2/9957073/26546a45d172/genes-14-00336-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/26f2/9957073/2e5f97f5cfe4/genes-14-00336-g003.jpg

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From Micro to Macro: Avian Chromosome Evolution is Dominated by Natural Selection.从微观到宏观:鸟类染色体进化受自然选择主导。
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本文引用的文献

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2
Chromosome Fusion Affects Genetic Diversity and Evolutionary Turnover of Functional Loci but Consistently Depends on Chromosome Size.染色体融合影响功能基因座的遗传多样性和进化更替,但始终依赖于染色体大小。
Mol Biol Evol. 2021 Sep 27;38(10):4449-4462. doi: 10.1093/molbev/msab185.
3
The probability of fusions joining sex chromosomes and autosomes.
昆虫染色体核糖体基因的结构与进化
Insects. 2024 Aug 4;15(8):593. doi: 10.3390/insects15080593.
4
Chromosome study of the Hymenoptera (Insecta): from cytogenetics to cytogenomics.膜翅目(昆虫纲)的染色体研究:从细胞遗传学到细胞基因组学
Comp Cytogenet. 2023 Nov 1;17:239-250. doi: 10.3897/compcytogen.17.112332. eCollection 2023.
性染色体与常染色体发生融合的概率。
Biol Lett. 2020 Nov;16(11):20200648. doi: 10.1098/rsbl.2020.0648. Epub 2020 Nov 25.
4
A checklist of chromosome numbers and a review of karyotype variation in Odonata of the world.世界蜻蜓目染色体数目清单及核型变异综述。
Comp Cytogenet. 2020 Oct 22;14(4):501-540. doi: 10.3897/CompCytogen.v14i4.57062. eCollection 2020.
5
Chromosome number evolves at equal rates in holocentric and monocentric clades.染色体数在全着丝粒和单着丝粒类群中以相同的速率进化。
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Lineage-specific patterns of chromosome evolution are the rule not the exception in Polyneoptera insects.多新翅目昆虫的染色体进化具有谱系特异性模式,这是普遍现象而非例外。
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