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‘Gantong 1’ 中与花色素苷生物合成相关的 bHLH 转录因子的全基因组特征分析与研究

Genome-Wide Characterization and Analysis of bHLH Transcription Factors Related to Anthocyanin Biosynthesis in ('Gantong 1').

机构信息

College of Forestry, Jiangxi Agricultural University, Nanchang 330096, China.

Key Laboratory of Horticultural Plant Genetics and Improvement of Jiangxi Province, Institute of Biological Resources, Jiangxi Academy of Sciences, Nanchang 330096, China.

出版信息

Int J Mol Sci. 2023 Feb 9;24(4):3498. doi: 10.3390/ijms24043498.

Abstract

is one of the most commonly used tree species in landscaping. Improving its ornamental traits, particularly bark and leaf colors, is one of the key breeding goals. The basic helix-loop-helix (bHLH) transcription factors (TFs) are crucial in controlling anthocyanin biosynthesis in many plants. However, their role in remains largely unknown. In this study, we identified 150 bHLH TFs () using natural mutant 'Gantong 1', which has unusual bark and leaf colors. Phylogenetic analysis revealed that 150 CcbHLHs were divided into 26 subfamilies which shared similar gene structures and conserved motifs. According to the protein homology analysis, we identified four candidate CcbHLHs that were highly conserved compared to the TT8 protein in . These TFs are potentially involved in anthocyanin biosynthesis in . RNA-seq analysis revealed specific expression patterns of in different tissue types. Furthermore, we verified expression patterns of seven (, , , , , , and ) in various tissue types at different growth stages using qRT-PCR. This study opens a new avenue for subsequent research on anthocyanin biosynthesis regulated by TFs in .

摘要

是园林中最常用的树种之一。改善其观赏特性,特别是树皮和叶片颜色,是其主要的育种目标之一。碱性螺旋-环-螺旋(bHLH)转录因子(TFs)在许多植物的花色素苷生物合成中起着关键作用。然而,它们在中的作用在很大程度上尚不清楚。在这项研究中,我们使用天然突变体'Gantong 1'鉴定了 150 个 bHLH TFs(),该突变体具有不寻常的树皮和叶片颜色。系统发育分析表明,150 个 CcbHLHs 分为 26 个亚家族,它们具有相似的基因结构和保守基序。根据蛋白质同源性分析,我们鉴定出了四个与 中的 TT8 蛋白高度保守的候选 CcbHLH。这些 TF 可能参与了中的花色素苷生物合成。RNA-seq 分析显示了在不同组织类型中 的特定表达模式。此外,我们使用 qRT-PCR 验证了七个 (,,,,,和)在不同组织类型和不同生长阶段的表达模式。这项研究为后续研究 TFs 调控中的花色素苷生物合成开辟了新途径。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e287/9959432/b4dc722e7299/ijms-24-03498-g001.jpg

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