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差异表达基因与人类年龄相关性疾病的分子易感性。

Differentially Expressed Genes and Molecular Susceptibility to Human Age-Related Diseases.

机构信息

Institute of Cytology and Genetics, Siberian Branch of Russian Academy of Sciences (SB RAS), Novosibirsk 630090, Russia.

The Natural Sciences Department, Novosibirsk State University, Novosibirsk 630090, Russia.

出版信息

Int J Mol Sci. 2023 Feb 16;24(4):3996. doi: 10.3390/ijms24043996.

Abstract

Mainstream transcriptome profiling of susceptibility versus resistance to age-related diseases (ARDs) is focused on differentially expressed genes (DEGs) specific to gender, age, and pathogeneses. This approach fits in well with predictive, preventive, personalized, participatory medicine and helps understand how, why, when, and what ARDs one can develop depending on their genetic background. Within this mainstream paradigm, we wanted to find out whether the known ARD-linked DEGs available in PubMed can reveal a molecular marker that will serve the purpose in anyone's any tissue at any time. We sequenced the periaqueductal gray (PAG) transcriptome of tame versus aggressive rats, identified rat-behavior-related DEGs, and compared them with their known homologous animal ARD-linked DEGs. This analysis yielded statistically significant correlations between behavior-related and ARD-susceptibility-related fold changes (log values) in the expression of these DEG homologs. We found principal components, PC1 and PC2, corresponding to the half-sum and the half-difference of these log values, respectively. With the DEGs linked to ARD susceptibility and ARD resistance in humans used as controls, we verified these principal components. This yielded only one statistically significant common molecular marker for ARDs: an excess of Fcγ receptor IIb suppressing immune cell hyperactivation.

摘要

主流的与年龄相关疾病(ARDs)易感性和抗性相关的转录组谱分析侧重于特定于性别、年龄和发病机制的差异表达基因(DEGs)。这种方法非常适合预测性、预防性、个性化、参与式医学,有助于了解一个人根据其遗传背景可以在何时、为何、如何以及发展何种 ARD。在这种主流范式中,我们想知道在 PubMed 中可用的已知与 ARD 相关的 DEGs 是否可以揭示一个分子标记,该标记将在任何时间、任何组织中为任何人服务。我们对温顺和攻击性大鼠的导水管周围灰质(PAG)转录组进行了测序,鉴定出与大鼠行为相关的 DEGs,并将其与已知的同源动物 ARD 相关的 DEGs 进行了比较。这项分析在这些 DEG 同源物的表达中产生了与行为相关和 ARD 易感性相关的折叠变化(对数)之间具有统计学意义的相关性。我们发现了与这些对数的半和差分别对应的主成分 PC1 和 PC2。使用与 ARD 易感性和 ARD 抗性相关的 DEGs 作为对照,我们验证了这些主成分。这仅产生了一个与 ARD 相关的统计学上显著的共同分子标记:Fcγ 受体 IIb 过量抑制免疫细胞过度激活。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/938b/9966505/a279ce12851a/ijms-24-03996-g001.jpg

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