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基于基因表达综合芯片数据探讨乌药-人参药对防治腹泻型肠易激综合征的机制

Mechanism of Wuyao-Ginseng Medicine Pair in the Prevention and Treatment of Diarrhea-Type Irritable Bowel Syndrome Based on Gene Expression Omnibus Chip Data.

作者信息

Sun Wenjing, Qing Ruizi, Fan Zhiqiang, He Qin, Wu Jinhong, He Yang, Ouyang Linqi, Chen Zhen, Deng Guiming

机构信息

The First Hospital of Hunan University of Chinese Medicine, Changsha 410007, China.

出版信息

Life (Basel). 2023 Jan 27;13(2):339. doi: 10.3390/life13020339.

Abstract

Based on a Gene Expression Omnibus (GEO) chip analysis combined with network pharmacology and molecular docking technology, in this study we explored the molecular targets and mechanism of the wuyao-ginseng medicine pair in the prevention and treatment of diarrhea-type irritable bowel syndrome (IBS-D). The Traditional Chinese Medicine Systems Pharmacology Database and Analysis Platform (TCMSP) was used to search for the chemical constituents and targets of wuyao and ginseng. The UniProt database was used to search for the target gene name. In the GEO database, IBS was searched to obtain GSE36701 and GSE14841 microarray data. We imported the intersection targets into the STRING database to construct a protein-protein interaction (PPI) network. Kyoto Encyclopedia of Genes and Genomes (KEGG) and Gene Ontology (Go) pathway analyses were performed using the Metascape database. A total of 30 active ingredients of wuyao-ginseng, 171 drug targets, 1257 IBS differentially expressed genes, and 20 drug-disease intersection genes were obtained from the GEO data. We screened the results and obtained the core active ingredients beta-sitosterol, DMPEC, Boldine, etc.; the core targets NCOA2, EGFR, VEGFA, etc.; and the key pathways P13K-Akt, MAPK, etc. The wuyao-ginseng medicine pair may be involved in inflammation-related signaling pathways, acting on disease targets such as NCOA2, EGFR, and VEGFA as well as pathways such as P13K-Akt and MAPK, thereby playing a key role in the prevention and treatment of IBS-D.

摘要

基于基因表达综合数据库(GEO)芯片分析,结合网络药理学和分子对接技术,本研究探索了乌药 - 人参药对在预防和治疗腹泻型肠易激综合征(IBS - D)中的分子靶点和作用机制。利用中药系统药理学数据库与分析平台(TCMSP)检索乌药和人参的化学成分及靶点。使用UniProt数据库检索目标基因名称。在GEO数据库中检索IBS,获取GSE36701和GSE14841芯片数据。将交集靶点导入STRING数据库构建蛋白质 - 蛋白质相互作用(PPI)网络。使用Metascape数据库进行京都基因与基因组百科全书(KEGG)和基因本体论(Go)通路分析。从GEO数据中总共获得了30种乌药 - 人参活性成分、171个药物靶点、1257个IBS差异表达基因和20个药物 - 疾病交集基因。我们对结果进行筛选,得到核心活性成分β - 谷甾醇、DMPEC、去甲波尔定等;核心靶点核受体辅激活因子2(NCOA2)、表皮生长因子受体(EGFR)、血管内皮生长因子A(VEGFA)等;以及关键通路磷脂酰肌醇 - 3激酶 - 蛋白激酶B(P13K - Akt)、丝裂原活化蛋白激酶(MAPK)等。乌药 - 人参药对可能参与炎症相关信号通路,作用于NCOA2、EGFR和VEGFA等疾病靶点以及P13K - Akt和MAPK等通路,从而在IBS - D的预防和治疗中发挥关键作用。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9459/9961312/5bfd6a808f2c/life-13-00339-g001.jpg

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