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赤座肟和列凡替利德产生菌的分类地位及次生代谢物生物合成基因簇

Taxonomic Positions and Secondary Metabolite-Biosynthetic Gene Clusters of Akazaoxime- and Levantilide-Producers.

作者信息

Komaki Hisayuki, Tamura Tomohiko, Igarashi Yasuhiro

机构信息

Biological Resource Center, National Institute of Technology and Evaluation (NBRC), Chiba 292-0818, Japan.

Biotechnology Research Center and Department of Biotechnology, Toyama Prefectural University, Toyama 939-0398, Japan.

出版信息

Life (Basel). 2023 Feb 15;13(2):542. doi: 10.3390/life13020542.

Abstract

sp. AKA109 is a producer of akazaoxime and A-76356, whereas sp. AKA38 is that of levantilide C. We aimed to clarify their taxonomic positions and identify biosynthetic gene clusters (BGCs) of these compounds. In 16S rRNA gene and DNA gyrase subunit B gene () sequence analyses, strains AKA109 and AKA38 were the most closely related to MMS20-R2-29 and HKI0641, respectively. Although sp. AKA109 was identified as by the sequence similarity and DNA-DNA relatedness based on whole genome sequences, sp. AKA38 was classified to a new genomospecies. AKA109 harbored six type-I polyketide synthase (PKS), one type-II PKS, one type-III PKS, three non-ribosomal peptide synthetase (NRPS) and three hybrid PKS/NRPS gene clusters, among which the BGC of akazaoxime and A-76356 was identified. These gene clusters are conserved in MMS20-R2-29 sp. AKA38 harbored two type-I PKS, one of which was responsible for levantilide C, one type-II PKS, one type-III PKS, two NRPS and five hybrid PKS/NRPS gene clusters. We predicted products derived from these gene clusters through bioinformatic analyses. Consequently, these two strains are revealed to be promising sources for diverse non-ribosomal peptide and polyketide compounds.

摘要

菌株AKA109是赤藓醇肟和A-76356的产生菌,而菌株AKA38是左旋内酯C的产生菌。我们旨在阐明它们的分类地位,并鉴定这些化合物的生物合成基因簇(BGCs)。在16S rRNA基因和DNA促旋酶亚基B基因()序列分析中,菌株AKA109和AKA38分别与MMS20-R2-29和HKI0641关系最为密切。尽管基于全基因组序列的序列相似性和DNA-DNA相关性,菌株AKA109被鉴定为,但菌株AKA38被归类为一个新的基因组种。AKA109含有六个I型聚酮合酶(PKS)、一个II型PKS、一个III型PKS、三个非核糖体肽合成酶(NRPS)和三个杂合PKS/NRPS基因簇,其中鉴定出了赤藓醇肟和A-76356的BGC。这些基因簇在MMS20-R2-29中是保守的。菌株AKA38含有两个I型PKS,其中一个负责左旋内酯C,一个II型PKS,一个III型PKS,两个NRPS和五个杂合PKS/NRPS基因簇。我们通过生物信息学分析预测了这些基因簇的产物。因此,这两个菌株被证明是多种非核糖体肽和聚酮化合物的有前途的来源。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8415/9967187/cebf0fc1adf2/life-13-00542-g001.jpg

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