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基于Cre/系统在……中开发高效的基因组缩减工具

Development of Efficient Genome-Reduction Tool Based on Cre/ System in .

作者信息

Kitagawa Wataru, Hata Miyako

机构信息

Bioproduction Research Institute, National Institute of Advanced Industrial and Technology (AIST), Sapporo 062-8517, Japan.

Graduate School of Agriculture, Hokkaido University, Sapporo 060-8589, Japan.

出版信息

Microorganisms. 2023 Jan 19;11(2):268. doi: 10.3390/microorganisms11020268.

Abstract

has been extensively studied for its excellent ability to degrade artificial chemicals and its capability to synthesize biosurfactants and antibiotics. In recent years, studies have attempted to use as a gene expression host. Various genetic tools, such as plasmid vectors, transposon mutagenesis, and gene disruption methods have been developed for use in ; however, no effective method has been reported for performing large-size genome reduction. Therefore, the present study developed an effective plasmid-curing method using the levansucrase-encoding gene and a simple two-step genome-reduction method using a modified Cre/ system. For the results, JCM 2895 was used as the model; a mutant strain that cured all four plasmids and deleted seven chromosomal regions was successfully obtained in this study. The total DNA deletion size was >600 kb, which corresponds mostly to 10% of the genome size. Using this method, a genome-structure-stabilized and unfavorable gene/function-lacking host strain can be created in . This genetic tool will help develop and improve strains for various industrial and environmental applications.

摘要

因其降解人工化学品的卓越能力以及合成生物表面活性剂和抗生素的能力而受到广泛研究。近年来,研究试图将其用作基因表达宿主。已开发出各种遗传工具,如质粒载体、转座子诱变和基因破坏方法用于[具体对象未明确];然而,尚未有报道称有执行大尺寸基因组缩减的有效方法。因此,本研究开发了一种使用编码果聚糖蔗糖酶的[具体基因未明确]基因的有效质粒消除方法,以及一种使用改良的Cre/[具体系统未明确]系统的简单两步基因组缩减方法。为了得到结果,使用了[具体菌株名称未明确]JCM 2895作为模型;在本研究中成功获得了一个消除了所有四个质粒并缺失了七个染色体区域的突变菌株。总的DNA缺失大小>600 kb,这大致相当于基因组大小的10%。使用这种方法,可以在[具体对象未明确]中创建一个基因组结构稳定且缺乏不利基因/功能的宿主菌株。这种遗传工具将有助于开发和改进用于各种工业和环境应用的[具体菌株未明确]菌株。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d905/9959502/d57b79ff85d6/microorganisms-11-00268-g001.jpg

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