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使用量子化学描述符和 GA-MLR 与 ANN 概念的 QSAR,合理设计用于自由基清除活性的吡咯抗氧化剂的低数据体系。

Rational Design of a Low-Data Regime of Pyrrole Antioxidants for Radical Scavenging Activities Using Quantum Chemical Descriptors and QSAR with the GA-MLR and ANN Concepts.

机构信息

Research Center of Nano Science and Technology, College of Sciences, Shanghai University, Shanghai 200444, China.

Program in Computer Science, Faculty of Science and Technology, Uttaradit Rajabhat University, Uttaradit 53000, Thailand.

出版信息

Molecules. 2023 Feb 7;28(4):1596. doi: 10.3390/molecules28041596.

Abstract

A series of pyrrole derivatives and their antioxidant scavenging activities toward the superoxide anion (O), hydroxyl radical (OH), and 1,1-diphenyl-2-picryl-hydrazyl (DPPH) served as the training data sets of a quantitative structure-activity relationship (QSAR) study. The steric and electronic descriptors obtained from quantum chemical calculations were related to the three O, OH, and DPPH scavenging activities using the genetic algorithm combined with multiple linear regression (GA-MLR) and artificial neural networks (ANNs). The GA-MLR models resulted in good statistical values; the coefficient of determination () of the training set was greater than 0.8, and the root mean square error () of the test set was in the range of 0.3 to 0.6. The main molecular descriptors that play an important role in the three types of antioxidant activities are the bond length, HOMO energy, polarizability, and AlogP. In the QSAR-ANN models, a good value above 0.9 was obtained, and the of the test set falls in a similar range to that of the GA-MLR models. Therefore, both the QSAR GA-MLR and QSAR-ANN models were used to predict the newly designed pyrrole derivatives, which were developed based on their starting reagents in the synthetic process.

摘要

一系列吡咯衍生物及其对超氧阴离子(O )、羟基自由基(OH )和 1,1-二苯基-2-苦基肼基(DPPH )的抗氧化清除活性被用作定量构效关系(QSAR )研究的训练数据集。从量子化学计算中获得的立体和电子描述符与使用遗传算法结合多元线性回归(GA-MLR )和人工神经网络(ANNs )的三种 O 、OH 和 DPPH 清除活性相关。GA-MLR 模型得到了良好的统计值;训练集的决定系数(R 2 )大于 0.8 ,测试集的均方根误差(RMSE )在 0.3 到 0.6 之间。在三种类型的抗氧化活性中起重要作用的主要分子描述符是键长、HOMO 能量、极化率和 AlogP 。在 QSAR-ANN 模型中,获得了良好的 R 2 值大于 0.9 ,并且测试集的 R 2 值落在与 GA-MLR 模型相似的范围内。因此,使用 QSAR GA-MLR 和 QSAR-ANN 模型来预测新设计的吡咯衍生物,这些衍生物是基于其在合成过程中的起始试剂开发的。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ff3b/9959680/bf244c18b9f3/molecules-28-01596-g005.jpg

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