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通过监督式机器学习对豌豆植株的回旋转头运动进行分类

Classifying Circumnutation in Pea Plants via Supervised Machine Learning.

作者信息

Wang Qiuran, Barbariol Tommaso, Susto Gian Antonio, Bonato Bianca, Guerra Silvia, Castiello Umberto

机构信息

Department of General Psychology, University of Padova, 35132 Padova, Italy.

Department of Information Engineering, University of Padova, 35131 Padova, Italy.

出版信息

Plants (Basel). 2023 Feb 20;12(4):965. doi: 10.3390/plants12040965.

DOI:10.3390/plants12040965
PMID:36840313
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC9965265/
Abstract

Climbing plants require an external support to grow vertically and enhance light acquisition. Climbers that find a suitable support demonstrate greater performance and fitness than those that remain prostrate. Support search is characterized by oscillatory movements (i.e., circumnutation), in which plants rotate around a central axis during their growth. Numerous studies have elucidated the mechanistic details of circumnutation, but how this phenomenon is controlled during support searching remains unclear. To fill this gap, here we tested whether simulation-based machine learning methods can capture differences in movement patterns nested in actual kinematical data. We compared machine learning classifiers with the aim of generating models that learn to discriminate between circumnutation patterns related to the presence/absence of a support in the environment. Results indicate that there is a difference in the pattern of circumnutation, depending on the presence of a support, that can be learned and classified rather accurately. We also identify distinctive kinematic features at the level of the junction underneath the tendrils that seems to be a superior indicator for discerning the presence/absence of the support by the plant. Overall, machine learning approaches appear to be powerful tools for understanding the movement of plants.

摘要

攀缘植物需要外部支撑来垂直生长并增加光照获取。找到合适支撑的攀缘植物比那些匍匐生长的表现出更好的性能和适应性。寻找支撑的特征是振荡运动(即回旋转头运动),植物在生长过程中围绕中心轴旋转。许多研究已经阐明了回旋转头运动的机制细节,但在寻找支撑过程中这种现象是如何被控制的仍不清楚。为了填补这一空白,我们在此测试基于模拟的机器学习方法是否能够捕捉嵌套在实际运动学数据中的运动模式差异。我们比较了机器学习分类器,目的是生成能够学会区分与环境中支撑物存在与否相关的回旋转头模式的模型。结果表明,根据支撑物的存在与否,回旋转头模式存在差异,并且可以相当准确地学习和分类。我们还在卷须下方的连接处水平识别出独特的运动学特征,这似乎是植物辨别支撑物存在与否的一个更优指标。总体而言,机器学习方法似乎是理解植物运动的有力工具。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f021/9965265/a43451c7c490/plants-12-00965-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f021/9965265/b20c9eef7bc3/plants-12-00965-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f021/9965265/4591f145dd3b/plants-12-00965-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f021/9965265/02b4d8e63b52/plants-12-00965-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f021/9965265/a43451c7c490/plants-12-00965-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f021/9965265/b20c9eef7bc3/plants-12-00965-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f021/9965265/4591f145dd3b/plants-12-00965-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f021/9965265/02b4d8e63b52/plants-12-00965-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f021/9965265/a43451c7c490/plants-12-00965-g004.jpg

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Biology (Basel). 2022 Mar 6;11(3):405. doi: 10.3390/biology11030405.
2
The coding of object thickness in plants: When roots matter.植物中物体厚度的编码:当根系起作用时。
J Comp Psychol. 2021 Nov;135(4):495-504. doi: 10.1037/com0000289. Epub 2021 Aug 19.
3
Can Plants Move Like Animals? A Three-Dimensional Stereovision Analysis of Movement in Plants.植物能像动物一样移动吗?植物运动的三维立体视觉分析
Biology (Basel). 2024 Jul 5;13(7):502. doi: 10.3390/biology13070502.
4
Artificial and biological supports are different for pea plants.人工和生物支撑物对豌豆植物是不同的。
Plant Signal Behav. 2024 Dec 31;19(1):2355739. doi: 10.1080/15592324.2024.2355739. Epub 2024 Jun 5.
5
Ascent and Attachment in Pea Plants: A Matter of Iteration.豌豆植物的向上生长与附着:迭代问题
Plants (Basel). 2024 May 16;13(10):1389. doi: 10.3390/plants13101389.
6
Plant Signaling, Behavior and Communication.植物信号传导、行为与通讯
Plants (Basel). 2024 Apr 18;13(8):1132. doi: 10.3390/plants13081132.
Animals (Basel). 2021 Jun 22;11(7):1854. doi: 10.3390/ani11071854.
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Directed Evolution of a Selective and Sensitive Serotonin Sensor via Machine Learning.通过机器学习对选择性和灵敏的血清素传感器进行定向进化。
Cell. 2020 Dec 23;183(7):1986-2002.e26. doi: 10.1016/j.cell.2020.11.040. Epub 2020 Dec 16.
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Sci Rep. 2020 Nov 10;10(1):19465. doi: 10.1038/s41598-020-76588-z.
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On-line control of movement in plants.植物运动的在线控制。
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