Microbes in Health and Disease Theme, Newcastle University Biosciences Institute, Newcastle University, Newcastle upon Tyne, UK.
Department of Biosciences, Durham University, Durham, UK.
Mol Microbiol. 2023 Jul;120(1):45-53. doi: 10.1111/mmi.15047. Epub 2023 Mar 9.
Bacteria are continuously exposed to predation from bacteriophages (phages) and, in response, have evolved a broad range of defence systems. These systems can prevent the replication of phages and other mobile genetic elements (MGE). Defence systems are often encoded together in genomic loci defined as "defence islands", a tendency that has been extensively exploited to identify novel antiphage systems. In the last few years, >100 new antiphage systems have been discovered, and some display homology to components of the immune systems of plants and animals. In many instances, prediction tools have found domains with similar predicted functions present as different combinations within distinct antiphage systems. In this Perspective Article, we review recent reports describing the discovery and the predicted domain composition of several novel antiphage systems. We discuss several examples of similar protein domains adopted by different antiphage systems, including domains of unknown function (DUFs), domains involved in nucleic acid recognition and degradation, and domains involved in NAD+ depletion. We further discuss the potential evolutionary advantages that could have driven the independent acquisition of these domains by different antiphage systems.
细菌不断受到噬菌体(phages)的捕食,作为回应,它们进化出了广泛的防御系统。这些系统可以防止噬菌体和其他移动遗传元件(MGE)的复制。防御系统通常一起编码在被定义为“防御岛”的基因组基因座中,这种倾向已被广泛用于识别新的抗噬菌体系统。在过去的几年中,已经发现了>100 种新的抗噬菌体系统,其中一些与动植物免疫系统的成分具有同源性。在许多情况下,预测工具发现具有相似预测功能的结构域以不同的组合存在于不同的抗噬菌体系统中。在这篇观点文章中,我们回顾了最近描述几种新型抗噬菌体系统的发现和预测结构域组成的报告。我们讨论了不同抗噬菌体系统采用的几个类似蛋白结构域的例子,包括未知功能域(DUFs)、参与核酸识别和降解的结构域以及参与 NAD+消耗的结构域。我们进一步讨论了可能促使不同抗噬菌体系统独立获得这些结构域的潜在进化优势。