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深入探讨阿托品作为 AKR1B1 潜在抑制剂的药理学重要性:通过详细的计算研究:DFTs、ADMET、分子对接和分子动力学研究。

New Insight into the Pharmacological Importance of Atropine as the Potential Inhibitor of AKR1B1 via Detailed Computational Investigations: DFTs, ADMET, Molecular Docking, and Molecular Dynamics Studies.

机构信息

Department of Pharmaceutical Chemistry, Faculty of Pharmacy, The Islamia University of Bahawalpur, Bahawalpur, 63100, Pakistan.

Department of Biotechnology, College of Science, Taif University, P.O. Box 11099, Taif, 21944, Saudi Arabia.

出版信息

Appl Biochem Biotechnol. 2023 Aug;195(8):5136-5157. doi: 10.1007/s12010-023-04411-2. Epub 2023 Feb 27.

DOI:10.1007/s12010-023-04411-2
PMID:36847982
Abstract

The aim of this research is to investigate the quantum geometric properties and chemical reactivity of atropine, a pharmaceutically active tropane alkaloid. Using density functional theory (DFT) computations with the B3LYP/SVP functional theory basis set, the most stable geometry of atropine was determined. Additionally, a variety of energetic molecular parameters were calculated, such as the optimized energy, atomic charges, dipole moment, frontier molecular orbital energies, HOMO-LUMO energy gap, molecular electrostatic potential, chemical reactivity descriptors, and molecular polarizability. To determine atropine's inhibitory potential, molecular docking was used to analyze ligand interactions within the active pockets of aldo-keto reductase (AKR1B1 and AKR1B10). The results of these studies showed that atropine has greater inhibitory action against AKR1B1 than AKR1B10, which was further validated through molecular dynamic simulations by analyzing root mean square deviation (RMSD) and root mean square fluctuations (RMSF). The results of the molecular docking simulation were supplemented with simulation data, and the ADMET characteristics were also determined to predict the drug likeness of a potential compound. In conclusion, the research suggests that atropine has potential as an inhibitor of AKR1B1 and could be used as a parent compound for the synthesis of more potent leads for the treatment of colon cancer associated with the sudden expression of AKR1B1.

摘要

本研究旨在探讨莨菪碱的量子几何性质和化学反应活性,莨菪碱是一种具有药用活性的托烷生物碱。采用密度泛函理论(DFT)计算,以 B3LYP/SVP 理论基组确定莨菪碱的最稳定几何构型。此外,还计算了各种能量分子参数,如优化能、原子电荷、偶极矩、前沿分子轨道能、HOMO-LUMO 能隙、分子静电势、化学反应性描述符和分子极化率。为了确定莨菪碱的抑制潜力,采用分子对接分析分析了醛酮还原酶(AKR1B1 和 AKR1B10)活性口袋内配体的相互作用。这些研究结果表明,莨菪碱对 AKR1B1 的抑制作用大于 AKR1B10,通过分析均方根偏差(RMSD)和均方根波动(RMSF)对分子动力学模拟进一步验证了这一点。分子对接模拟的结果补充了模拟数据,并确定了 ADMET 特征,以预测潜在化合物的药物相似性。总之,该研究表明莨菪碱具有作为 AKR1B1 抑制剂的潜力,可作为合成更有效的治疗与 AKR1B1 突然表达相关的结肠癌先导化合物的母体化合物。

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