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德克酵母呼吸碳源的代谢及其与乙酸生成的关系。

The Metabolism of Respiring Carbon Sources by Dekkera bruxellensis and Its Relation with the Production of Acetate.

机构信息

Laboratory of Microbial Genetics, Department of Genetics, Federal University of Pernambuco, Av. Moraes Rego, 1235. Cidade Universitária, Recife, PE, 50.670-901, Brazil.

Department of Antibiotics, Federal University of Pernambuco, Recife, Brazil.

出版信息

Appl Biochem Biotechnol. 2023 Oct;195(10):6369-6391. doi: 10.1007/s12010-023-04398-w. Epub 2023 Mar 3.

DOI:10.1007/s12010-023-04398-w
PMID:36867386
Abstract

Dekkera bruxellensis has been studied for several aspects of its metabolism over the past years, which has expanded our comprehension on its importance to industrial fermentation processes and uncovered its industrial relevance. Acetate is a metabolite often found in D. bruxellensis aerobic cultivations, whereas its production is linked to decreased ethanol yields. In a previous work, we aimed to understand how acetate metabolism affected the fermentation capacity of D. bruxellensis. In the present work, we evaluated the role of acetate metabolism in respiring cells using ammonium or nitrate as nitrogen sources. Our results showed that galactose is a strictly respiratory sugar and that a relevant part of its carbon is lost, while the remaining is metabolised through the Pdh bypass pathway before being assimilated into biomass. When this pathway was blocked, yeast growth was reduced while more carbon was assimilated to the biomass. In nitrate, more acetate was produced as expected, which increased carbon assimilation, although less galactose was uptaken from the medium. This scenario was not affected by the Pdh bypass inhibition. The confirmation that acetate production was crucial for carbon assimilation was brought by cultivations in pyruvate. All physiological data were connected to the expression patterns of PFK1, PDC1, ADH1, ALD3, ALD5 and ATP1 genes. Other respiring carbon sources could only be properly used by the cells when some external acetate was supplied. Therefore, the results reported herein helped in providing valuable contributions to the understanding of the oxidative metabolism in this potential industrial yeast.

摘要

多年来,人们一直在研究德克氏毕赤酵母(Dekkera bruxellensis)在其代谢的多个方面,这扩展了我们对其在工业发酵过程中的重要性的理解,并揭示了其在工业上的相关性。在德克氏毕赤酵母的好氧培养中,通常会发现乙酸盐是一种代谢物,而其产生与乙醇产量的降低有关。在之前的一项研究中,我们旨在了解乙酸盐代谢如何影响德克氏毕赤酵母的发酵能力。在本研究中,我们使用铵盐或硝酸盐作为氮源来评估其在呼吸细胞中的代谢作用。结果表明,半乳糖是一种严格的呼吸性糖,其中一部分碳会丢失,而剩余的碳则通过 Pdh 旁路途径代谢,然后被同化到生物量中。当该途径被阻断时,酵母生长受到抑制,而更多的碳被同化到生物量中。在硝酸盐中,如预期的那样,会产生更多的乙酸盐,从而增加碳的同化,尽管从培养基中摄取的半乳糖减少。这种情况不受 Pdh 旁路抑制的影响。通过丙酮酸培养来确认乙酸盐的产生对碳同化至关重要。所有生理数据都与 PFK1、PDC1、ADH1、ALD3、ALD5 和 ATP1 基因的表达模式相关联。当提供一些外部乙酸盐时,其他呼吸性碳源才能被细胞正确利用。因此,本文的研究结果有助于深入了解这种潜在工业酵母的氧化代谢。

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本文引用的文献

1
Metabolic and biotechnological insights on the analysis of the Pdh bypass and acetate production in the yeast Dekkera bruxellensis.在酵母德克氏酵母中分析 Pdh 旁路和乙酸盐生产的代谢和生物技术见解。
J Biotechnol. 2022 Aug 20;355:42-52. doi: 10.1016/j.jbiotec.2022.06.008. Epub 2022 Jun 26.
2
Comparative proteomic analyses reveal the metabolic aspects and biotechnological potential of nitrate assimilation in the yeast Dekkera bruxellensis.比较蛋白质组学分析揭示了酵母德克氏酵母硝酸盐同化作用的代谢方面和生物技术潜力。
Appl Microbiol Biotechnol. 2021 Feb;105(4):1585-1600. doi: 10.1007/s00253-021-11117-0. Epub 2021 Feb 4.
3
Nitrate boosts anaerobic ethanol production in an acetate-dependent manner in the yeast Dekkera bruxellensis.
硝酸盐以依赖乙酸盐的方式促进酵母德克氏毕赤酵母的厌氧乙醇生产。
J Ind Microbiol Biotechnol. 2019 Feb;46(2):209-220. doi: 10.1007/s10295-018-2118-1. Epub 2018 Dec 11.
4
First aspects on acetate metabolism in the yeast Dekkera bruxellensis: a few keys for improving ethanol fermentation.布鲁塞尔德克酵母中乙酸代谢的初步研究:改善乙醇发酵的几个关键因素
Yeast. 2018 Oct;35(10):577-584. doi: 10.1002/yea.3348. Epub 2018 Aug 29.
5
Molecular and functional characterization of two pyruvate decarboxylase genes, PDC1 and PDC5, in the thermotolerant yeast Kluyveromyces marxianus.耐热酵母马克斯克鲁维酵母中两种丙酮酸脱羧酶基因 PDC1 和 PDC5 的分子和功能特征。
Appl Microbiol Biotechnol. 2018 Apr;102(8):3723-3737. doi: 10.1007/s00253-018-8862-3. Epub 2018 Mar 1.
6
Glutamine: a major player in nitrogen catabolite repression in the yeast Dekkera bruxellensis.谷氨酰胺:在酵母德克酵母中氮分解代谢物阻遏的主要参与者。
Antonie Van Leeuwenhoek. 2017 Sep;110(9):1157-1168. doi: 10.1007/s10482-017-0888-5. Epub 2017 Jun 19.
7
Non-Saccharomyces and Saccharomyces strains co-fermentation increases acetaldehyde accumulation: effect on anthocyanin-derived pigments in Tannat red wines.非酿酒酵母和酿酒酵母菌株共发酵会增加乙醛积累:对丹那(Tannat)红葡萄酒中花色苷衍生色素的影响
Yeast. 2016 Jul;33(7):339-43. doi: 10.1002/yea.3156. Epub 2016 Mar 15.
8
Ach1 is involved in shuttling mitochondrial acetyl units for cytosolic C2 provision in Saccharomyces cerevisiae lacking pyruvate decarboxylase.在缺乏丙酮酸脱羧酶的酿酒酵母中,乙酰胆碱(Ach1)参与将线粒体乙酰单位穿梭至胞质溶胶以提供C2。
FEMS Yeast Res. 2015 May;15(3). doi: 10.1093/femsyr/fov015. Epub 2015 Apr 6.
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Galactose utilization sheds new light on sugar metabolism in the sequenced strain Dekkera bruxellensis CBS 2499.半乳糖利用为测序菌株布鲁塞尔德克酵母CBS 2499的糖代谢研究带来了新线索。
FEMS Yeast Res. 2015 Mar;15(2). doi: 10.1093/femsyr/fou009.
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Oxygen-limited cellobiose fermentation and the characterization of the cellobiase of an industrial Dekkera/Brettanomyces bruxellensis strain.工业德克酵母/布鲁塞尔酒香酵母菌株的氧限制纤维二糖发酵及纤维二糖酶特性研究
Springerplus. 2014 Jan 20;3:38. doi: 10.1186/2193-1801-3-38. eCollection 2014.