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新种,从河边土壤中分离得到。

sp. nov., isolated from riverside soil.

作者信息

Ra Jun Sik, Oh Eun Tak, Han Ji-Hye, Kim Seung Bum

机构信息

Department of Microbiology and Molecular Biology, College of Bioscience and Biotechnology, Chungnam National University, 99 Daehak-ro, Yuseong, Daejeon 34134, Republic of Korea.

Strategic Planning Department Performance Management Division, Nakdonggang National Institute of Biological Resources, Sangju, Gyeongsangbuk-do 37242, Republic of Korea.

出版信息

Int J Syst Evol Microbiol. 2023 Mar;73(3). doi: 10.1099/ijsem.0.005756.

Abstract

A novel Gram-stain-negative, yellow-pigmented, non-motile and rod-shaped bacterial strain designated MMS21-Er5 was isolated and subjected to polyphasic taxonomic characterization. MMS21- Er5 could grow at 4-34 °C (optimum, 30 °C), at pH 6-8 (optimum, pH 7) and in the presence of 0-2% NaCl (optimum, 1 %). The results of phylogenetic analysis based on 16S rRNA gene sequences indicated that MMS21- Er5 showed low levels of sequence similarities with other species, as the highest similarity of 97.83 % was observed with THG DN8.8, then 97.68 % with '' DCY 55 and 97.63 % with 15F3, which were well below the suggested cutoff for species distinction. The whole genome sequence of MMS21-Er5 consisted of a single contig of 5.63 Mbp, and the DNA G+C content was 34.06 mol%. The DNA-DNA hybridization and orthologous average nucleotide identity values were highest with KCTC 42726 (45.7 and 91.92% respectively). The predominant respiratory quinone for the strain was menaquinone-6 (MK-6), the major cellular fatty acid was iso-C, and the diagnostic polar lipids were phosphatidylethanolamine and phosphatidyldiethanolamine. The combination of physiological and biochemical tests clearly distinguished the strain from related species of the genus . On the basis of these results, strain MMS21-Er5 evidently represents a novel species of the genus for which the name sp. nov. is proposed (type strain=MMS21-Er5=KCTC 92256 =LMG 32524).

摘要

分离出一株名为MMS21-Er5的新型革兰氏阴性、黄色色素沉着、无运动性的杆状细菌菌株,并对其进行了多相分类学特征分析。MMS21-Er5能在4-34°C(最适温度为30°C)、pH值为6-8(最适pH值为7)以及0-2%NaCl(最适浓度为1%)的条件下生长。基于16S rRNA基因序列的系统发育分析结果表明,MMS21-Er5与其他物种的序列相似性较低,与THG DN8.8的最高相似性为97.83%,与“DCY 55”的相似性为97.68%,与15F3的相似性为97.63%,均远低于物种区分的建议阈值。MMS21-Er5的全基因组序列由一个5.63 Mbp的单一重叠群组成,DNA G+C含量为34.06 mol%。与KCTC 42726的DNA-DNA杂交和直系同源平均核苷酸同一性值最高(分别为45.7%和91.92%)。该菌株的主要呼吸醌为甲基萘醌-6(MK-6),主要细胞脂肪酸为异-C,诊断性极性脂质为磷脂酰乙醇胺和磷脂酰二乙醇胺。生理生化测试的结果清楚地将该菌株与该属的相关物种区分开来。基于这些结果,菌株MMS21-Er5显然代表了该属的一个新物种,为此提出新名称 sp. nov.(模式菌株 = MMS21-Er5 = KCTC 92256 = LMG 32524)。

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