• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

通过分子动力学模拟分析金属离子对木聚糖酶水解麦麸能力的影响。

Analysis of the effect of metal ions on the ability of Xylanase to hydrolyze wheat bran by molecular dynamics simulations.

作者信息

Hou Mingrui, Liang Chuanqi, Fei Yanan, Yang Dan, Zhang Ningjing, Lu Yujie, Wang Lei, Xing Zhiqiang, Zhao Zongpei

机构信息

School of Grain Science and Technology, Jiangsu University of Science and Technology, Zhenjiang, China.

Jiahe Foods Industry Co., Ltd., Suzhou, China.

出版信息

Front Bioeng Biotechnol. 2023 Feb 16;11:1142873. doi: 10.3389/fbioe.2023.1142873. eCollection 2023.

DOI:10.3389/fbioe.2023.1142873
PMID:36873368
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC9978823/
Abstract

Wheat bran is the main by-product of wheat processing, containing about 30% pentosan and 0.4%-0.7% ferulic acid. Wheat bran is the main raw material used to prepare feruloyl oligosaccharides by hydrolysis of Xylanase, we discovered that the ability of Xylanase to hydrolyze wheat bran could be affected in the presence of different metal ions. In the present study, we have probed the effects of different metal ions on the hydrolysis activity of Xylanase on wheat bran and tried to analyze the effect of Mn and Xylanase by molecular dynamic (MD) simulation. Our results suggested that Mn had improved the Xylanase hydrolyzing wheat bran to obtain feruloyl oligosaccharides. Particularly when the concentration of Mn reached 4 mmol/L, the optimal product has been obtained 2.8 times higher to compare with no addition. Through the MD simulation analysis, our results reveal that Mn can induce structural change in the active site, which enlarges the substrate binding pocket. The simulation results also revealed that the addition of Mn resulted in a low RMSD value compared with the absence of Mn and helped stabilize the complex. Mn could increase the enzymatic activity of Xylanase in the hydrolysis of feruloyl oligosaccharides in wheat bran. The finding could have significant implications for the preparation of feruloyl oligosaccharides from wheat bran.

摘要

麦麸是小麦加工的主要副产品,含有约30%的戊聚糖和0.4%-0.7%的阿魏酸。麦麸是通过木聚糖酶水解制备阿魏酰低聚糖的主要原料,我们发现不同金属离子的存在会影响木聚糖酶水解麦麸的能力。在本研究中,我们探究了不同金属离子对木聚糖酶水解麦麸活性的影响,并尝试通过分子动力学(MD)模拟分析锰和木聚糖酶的作用。我们的结果表明,锰提高了木聚糖酶水解麦麸以获得阿魏酰低聚糖的能力。特别是当锰的浓度达到4 mmol/L时,获得的最佳产物比不添加时高出2.8倍。通过MD模拟分析,我们的结果表明,锰可以诱导活性位点的结构变化,从而扩大底物结合口袋。模拟结果还表明,与不添加锰相比,添加锰导致较低的均方根偏差(RMSD)值,并有助于稳定复合物。锰可以提高木聚糖酶在麦麸水解阿魏酰低聚糖中的酶活性。这一发现可能对从麦麸制备阿魏酰低聚糖具有重要意义。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6be6/9978823/94d0f432556f/fbioe-11-1142873-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6be6/9978823/40cc5333708b/fbioe-11-1142873-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6be6/9978823/547b19f7928c/fbioe-11-1142873-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6be6/9978823/b293cadd4e9f/fbioe-11-1142873-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6be6/9978823/94d0f432556f/fbioe-11-1142873-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6be6/9978823/40cc5333708b/fbioe-11-1142873-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6be6/9978823/547b19f7928c/fbioe-11-1142873-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6be6/9978823/b293cadd4e9f/fbioe-11-1142873-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6be6/9978823/94d0f432556f/fbioe-11-1142873-g004.jpg

相似文献

1
Analysis of the effect of metal ions on the ability of Xylanase to hydrolyze wheat bran by molecular dynamics simulations.通过分子动力学模拟分析金属离子对木聚糖酶水解麦麸能力的影响。
Front Bioeng Biotechnol. 2023 Feb 16;11:1142873. doi: 10.3389/fbioe.2023.1142873. eCollection 2023.
2
Improving the Yield of Feruloyl Oligosaccharides from Rice Bran through Enzymatic Extrusion and Its Mechanism.通过酶法挤压提高米糠中阿魏酰低聚糖的得率及其机制
Foods. 2023 Mar 23;12(7):1369. doi: 10.3390/foods12071369.
3
Biochemical characterization of a novel feruloyl esterase from B1213 and its application for hydrolyzing wheat bran.来自B1213的新型阿魏酸酯酶的生化特性及其在水解麦麸中的应用。
3 Biotech. 2022 Jan;12(1):24. doi: 10.1007/s13205-021-03066-2. Epub 2021 Dec 22.
4
Feruloyl oligosaccharides stimulate the growth of Bifidobacterium bifidum.阿魏酰低聚糖刺激两歧双歧杆菌的生长。
Anaerobe. 2005 Aug;11(4):225-9. doi: 10.1016/j.anaerobe.2005.02.002. Epub 2005 Apr 19.
5
The effects of wheat bran composition on the production of biomass-hydrolyzing enzymes by Penicillium decumbens.麦麸成分对斜卧青霉产生生物质水解酶的影响。
Appl Biochem Biotechnol. 2008 Mar;146(1-3):119-28. doi: 10.1007/s12010-007-8049-3. Epub 2007 Sep 22.
6
Efficient ferulic acid and xylo-oligosaccharides production by a novel multi-modular bifunctional xylanase/feruloyl esterase using agricultural residues as substrates.利用农业废弃物作为底物,通过新型多功能多模块木聚糖酶/阿魏酸酯酶高效生产阿魏酸和木低聚糖。
Bioresour Technol. 2020 Feb;297:122487. doi: 10.1016/j.biortech.2019.122487. Epub 2019 Nov 25.
7
Impact and efficiency of GH10 and GH11 thermostable endoxylanases on wheat bran and alkali-extractable arabinoxylans.GH10和GH11耐热内切木聚糖酶对麦麸和碱提取阿拉伯木聚糖的影响及效率
Carbohydr Res. 2004 Oct 20;339(15):2529-40. doi: 10.1016/j.carres.2004.08.012.
8
Product patterns of a feruloyl esterase from Aspergillus nidulans on large feruloyl-arabino-xylo-oligosaccharides from wheat bran.阿魏酸酯酶从玉米麸皮中较大的阿魏酰阿拉伯木聚糖寡糖上的产物模式。
Bioresour Technol. 2012 Sep;119:425-8. doi: 10.1016/j.biortech.2012.01.185. Epub 2012 Jun 12.
9
Production, Characterization and Prebiotic Potential of Xylooligosaccharides Produced from Wheat Bran using KS1 Xylanase.利用KS1木聚糖酶从麦麸生产低聚木糖的制备、表征及益生元潜力
Indian J Microbiol. 2023 Sep;63(3):352-360. doi: 10.1007/s12088-023-01097-2. Epub 2023 Sep 4.
10
Impact of xylanase-treated wheat milling by-products on the physical and chemical properties of cakes.木聚糖酶处理的小麦加工副产物对蛋糕物理化学性质的影响。
J Sci Food Agric. 2021 Dec;101(15):6331-6337. doi: 10.1002/jsfa.11303. Epub 2021 May 21.

引用本文的文献

1
Cd and Zn regulating uptake and accumulation of TDCPP and TMPP in rice ( L.) in transcript and protein level.镉和锌在转录和蛋白质水平上调控水稻对TDCPP和TMPP的吸收与积累。
Physiol Mol Biol Plants. 2025 Apr;31(4):555-570. doi: 10.1007/s12298-025-01589-z. Epub 2025 May 8.

本文引用的文献

1
Immobilization of mutated xylanase from Neocallimastix patriciarum in E. coli and application for kraft pulp biobleaching.固定化突变木聚糖酶 Neocallimastix patriciarum 在大肠杆菌中的应用及其在硫酸盐浆生物漂白中的应用。
Braz J Biol. 2021 Aug 6;83:e243629. doi: 10.1590/1519-6984.243629. eCollection 2021.
2
In silico assessment of human Calprotectin subunits (S100A8/A9) in presence of sodium and calcium ions using Molecular Dynamics simulation approach.使用分子动力学模拟方法评估人钙卫蛋白亚基(S100A8/A9)在钠离子和钙离子存在下的计算评估。
PLoS One. 2019 Oct 17;14(10):e0224095. doi: 10.1371/journal.pone.0224095. eCollection 2019.
3
Expression and characterisation of feruloyl esterases from Lactobacillus fermentum JN248 and release of ferulic acid from wheat bran.
从发酵乳杆菌 JN248 中表达和鉴定阿魏酸酯酶及其对麦麸中阿魏酸的释放
Int J Biol Macromol. 2019 Oct 1;138:272-277. doi: 10.1016/j.ijbiomac.2019.07.086. Epub 2019 Jul 12.
4
Manganese binding to Rubisco could drive a photorespiratory pathway that increases the energy efficiency of photosynthesis.锰与 Rubisco 的结合可能会驱动一个光呼吸途径,从而提高光合作用的能量效率。
Nat Plants. 2018 Jul;4(7):414-422. doi: 10.1038/s41477-018-0191-0. Epub 2018 Jul 2.
5
Molecular Mechanisms of Enzyme Activation by Monovalent Cations.单价阳离子激活酶的分子机制。
J Biol Chem. 2016 Sep 30;291(40):20840-20848. doi: 10.1074/jbc.R116.737833. Epub 2016 Jul 26.
6
Insights into the mechanism of enzymatic hydrolysis of xylan.木聚糖酶解机制的研究进展。
Appl Microbiol Biotechnol. 2016 Jun;100(12):5205-14. doi: 10.1007/s00253-016-7555-z. Epub 2016 Apr 25.
7
Implementation of the CHARMM Force Field in GROMACS: Analysis of Protein Stability Effects from Correction Maps, Virtual Interaction Sites, and Water Models.CHARMM力场在GROMACS中的实现:来自校正图、虚拟相互作用位点和水模型的蛋白质稳定性效应分析
J Chem Theory Comput. 2010 Feb 9;6(2):459-66. doi: 10.1021/ct900549r. Epub 2010 Jan 25.
8
Structural analysis of a glycoside hydrolase family 11 xylanase from Neocallimastix patriciarum: insights into the molecular basis of a thermophilic enzyme.从 Neocallimastix patriciarum 中分离的糖苷水解酶家族 11 木聚糖酶的结构分析:对嗜热酶的分子基础的深入了解。
J Biol Chem. 2014 Apr 18;289(16):11020-11028. doi: 10.1074/jbc.M114.550905. Epub 2014 Mar 11.
9
Competition among metal ions for protein binding sites: determinants of metal ion selectivity in proteins.金属离子对蛋白质结合位点的竞争:蛋白质中金属离子选择性的决定因素。
Chem Rev. 2014 Jan 8;114(1):538-56. doi: 10.1021/cr4004665. Epub 2013 Sep 16.
10
Production of xylooligosaccharide from wheat bran by microwave assisted enzymatic hydrolysis.麦麸微波辅助酶解制备木低聚糖。
Food Chem. 2013 Jun 1;138(2-3):1531-5. doi: 10.1016/j.foodchem.2012.09.124. Epub 2012 Nov 12.