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作者信息

Umar Abdullahi B, Uzairu Adamu

机构信息

Department of Chemistry, Faculty of Physical Sciences, Ahmad Bello University, Zaria, Nigeria.

出版信息

J Taibah Univ Med Sci. 2023 Feb 4;18(5):933-946. doi: 10.1016/j.jtumed.2023.01.013. eCollection 2023 Oct.

Abstract

OBJECTIVES

kinase is an essential therapeutic target in melanoma and other types of tumors. Because of its resistance to known inhibitors and the adverse effects of some identified inhibitors, investigation of new potent inhibitors is necessary.

METHODS

In the present work, in silico strategies such as molecular docking simulation, pharmacokinetic evaluation, and density functional theory (DFT) computations were used to identify potential inhibitors from a set of 72 anticancer compounds in the PubChem database.

RESULTS

Five top-ranked molecules (12, 15, 30, 31, and 35) with excellent docking scores (MolDock score ≥90 kcal mol, Rerank score ≥60 kcal mol) were selected. Several potential binding interactions were discovered between the molecules and . The formation of H-bonds and hydrophobic interactions with essential residues of suggested the high stability of these complexes. The selected compounds had excellent pharmacological properties according to the drug likeness rules (bioavailability) and pharmacokinetic properties. Similarly, the energy for the frontier molecular orbitals, such as the HOMO, LUMO, energy gap, and other reactivity parameters, was computed with DFT. The frontier molecular orbital surfaces and electrostatic potentials were investigated to demonstrate the charge-density distributions potentially associated with anticancer activity.

CONCLUSION

The identified compounds were found to be potent hit compounds for inhibition with superior pharmacokinetic properties; therefore, they may be promising cancer drug candidates.

摘要

目的

激酶是黑色素瘤和其他类型肿瘤的重要治疗靶点。由于其对已知抑制剂具有抗性且一些已鉴定的抑制剂存在不良反应,因此有必要研究新型强效抑制剂。

方法

在本研究中,采用了诸如分子对接模拟、药代动力学评估和密度泛函理论(DFT)计算等计算机辅助策略,从PubChem数据库中的72种抗癌化合物中筛选潜在抑制剂。

结果

选择了5个排名靠前的分子(12、15、30、31和35),其对接分数优异(MolDock分数≥90 kcal/mol,重新排名分数≥60 kcal/mol)。发现这些分子与……之间存在几种潜在的结合相互作用。与……的关键残基形成氢键和疏水相互作用表明这些复合物具有高稳定性。根据药物相似性规则(生物利用度)和药代动力学性质,所选化合物具有优异的药理特性。同样,利用DFT计算了前沿分子轨道的能量,如最高占据分子轨道(HOMO)、最低未占分子轨道(LUMO)、能隙和其他反应性参数。研究了前沿分子轨道表面和静电势,以证明可能与抗癌活性相关的电荷密度分布。

结论

所鉴定的化合物被发现是抑制……的强效命中化合物,具有优异的药代动力学性质;因此,它们可能是有前景的抗癌药物候选物。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/cda1/9976450/f08b41a15b1e/gr1.jpg

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