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利用工程化卡宾转移酶实现化学发散性C(sp)-H和C(sp)-H氰甲基化反应

Chemodivergent C(sp)-H and C(sp)-H Cyanomethylation Using Engineered Carbene Transferases.

作者信息

Zhang Juner, Maggiolo Ailiena O, Alfonzo Edwin, Mao Runze, Porter Nicholas J, Abney Nayla, Arnold Frances H

机构信息

Division of Chemistry and Chemical Engineering, California Institute of Technology; Pasadena, California, United States.

Present address: Department of Bioengineering, Stanford University; Stanford, California, United States.

出版信息

Nat Catal. 2023 Feb;6(2):152-160. doi: 10.1038/s41929-022-00908-x. Epub 2023 Jan 19.

Abstract

The ubiquity of C-H bonds presents an attractive opportunity to elaborate and build complexity in organic molecules. Methods for selective functionalization, however, often must differentiate among multiple chemically similar and, in some cases indistinguishable, C-H bonds. An advantage of enzymes is that they can be finely tuned using directed evolution to achieve control over divergent C-H functionalization pathways. Here, we demonstrate engineered enzymes that effect a new-to-nature C-H alkylation with unparalleled selectivity: two complementary carbene C-H transferases derived from a cytochrome P450 from deliver an -cyanocarbene into the -amino C(sp)-H bonds or the -arene C(sp)-H bonds of -substituted arenes. These two transformations proceed via different mechanisms, yet only minimal changes to the protein scaffold (nine mutations, less than 2% of the sequence) were needed to adjust the enzyme's control over the site-selectivity of cyanomethylation. The X-ray crystal structure of the selective C(sp)-H alkylase, P411-PFA, reveals an unprecedented helical disruption which alters the shape and electrostatics in the enzyme active site. Overall, this work demonstrates the advantages of enzymes as C-H functionalization catalysts for divergent molecular derivatization.

摘要

碳氢键的普遍性为在有机分子中进行精细修饰和构建复杂性提供了一个极具吸引力的机会。然而,选择性官能团化的方法通常必须区分多个化学性质相似、在某些情况下甚至难以区分的碳氢键。酶的一个优点是,可以通过定向进化对其进行精细调控,以实现对不同碳氢键官能团化途径的控制。在此,我们展示了经过工程改造的酶,它们能够以无与伦比的选择性实现一种自然界中未曾出现过的碳氢键烷基化反应:两种互补的卡宾碳氢键转移酶,它们源自一种细胞色素P450,可将一个氰基卡宾引入到取代芳烃的α-氨基C(sp³)-H键或α-芳基C(sp²)-H键中。这两种转化过程通过不同的机制进行,但只需对蛋白质支架进行最小程度的改变(九个突变,不到序列的2%),就能调整酶对氰甲基化位点选择性的控制。选择性C(sp³)-H烷基化酶P411-PFA的X射线晶体结构揭示了一种前所未有的螺旋结构破坏,这种破坏改变了酶活性位点的形状和静电性质。总体而言,这项工作展示了酶作为碳氢键官能团化催化剂用于不同分子衍生化的优势。

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