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新视角:与……相关细菌的共生模式及组装机制

New perspective: Symbiotic pattern and assembly mechanism of -associated bacteria.

作者信息

Ge Wei, Ren Yulian, Dong Chunbo, Shao Qiuyu, Bai Yanmin, He Zhaoying, Yao Ting, Zhang Yanwei, Zhu Guosheng, Deshmukh Sunil Kumar, Han Yanfeng

机构信息

Institute of Fungus Resources, Department of Ecology/Key Laboratory of Plant Resource Conservation and Germplasm Innovation in Mountainous Region (Ministry of Education), College of Life Sciences/Institute of Agro-Bioengineering, Guizhou University, Guiyang, Guizhou, China.

Analysis and Test Center, Huangshan University, Huangshan, China.

出版信息

Front Microbiol. 2023 Feb 16;14:1074468. doi: 10.3389/fmicb.2023.1074468. eCollection 2023.

Abstract

, an ectomycorrhizal fungus belonging to the Basidiomycetes, has significant medicinal and edible value, economic importance, and ecological benefits. However, remains incapable of artificial cultivation, which is thought to be due to the presence of bacteria. Therefore, much research has focused on the relationship between and bacteria, but rare bacteria are frequently overlooked, and symbiotic pattern and assembly mechanism of the bacterial community associated with remain unknown. In this study, the assembly mechanism and driving factors of both abundant and rare bacterial communities of were revealed by the null model. The symbiotic pattern of the bacterial community was examined using a co-occurrence network. Metabolic functions and phenotypes of the abundant and rare bacteria were compared using METAGENassist2, and the impacts of abiotic variables on the diversity of abundant and rare bacteria were examined using partial least squares path modeling. In the fruiting body and mycosphere of , there was a higher proportion of specialist bacteria compared with generalist bacteria. Dispersal limitation dominated the assembly of abundant and rare bacterial communities in the fruiting body and mycosphere. However, pH, 1-octen-3-ol, and total phosphorus of the fruiting body were the main driving factors of bacterial community assembly in the fruiting body, while available nitrogen and total phosphorus of the soil affected the assembly process of the bacterial community in the mycosphere. Furthermore, bacterial co-occurrence patterns in the mycosphere may be more complex compared with those in the fruiting body. Unlike the specific potential functions of abundant bacteria, rare bacteria may provide supplementary or unique metabolic pathways (such as sulfite oxidizer and sulfur reducer) to enhance the ecological function of . Notably, while volatile organic compounds can reduce mycosphere bacterial diversity, they can increase fruiting body bacterial diversity. Findings from this study further, our understanding of -associated microbial ecology.

摘要

一种属于担子菌门的外生菌根真菌,具有显著的药用、食用价值、经济重要性和生态效益。然而,它仍然无法人工栽培,这被认为是由于细菌的存在。因此,许多研究都集中在它与细菌的关系上,但稀有细菌经常被忽视,与它相关的细菌群落的共生模式和组装机制仍然未知。在本研究中,通过零模型揭示了它的丰富和稀有细菌群落的组装机制及驱动因素。使用共现网络研究了细菌群落的共生模式。使用METAGENassist2比较了丰富和稀有细菌的代谢功能和表型,并使用偏最小二乘路径模型研究了非生物变量对丰富和稀有细菌多样性的影响。在它的子实体和菌根圈中,专性细菌的比例高于泛性细菌。扩散限制主导了子实体和菌根圈中丰富和稀有细菌群落的组装。然而,子实体的pH值、1-辛烯-3-醇和总磷是子实体中细菌群落组装的主要驱动因素,而土壤中的有效氮和总磷影响了菌根圈中细菌群落的组装过程。此外,与子实体相比,菌根圈中的细菌共现模式可能更复杂。与丰富细菌的特定潜在功能不同,稀有细菌可能提供补充或独特的代谢途径(如亚硫酸盐氧化酶和硫还原剂)以增强它的生态功能。值得注意的是,虽然挥发性有机化合物会降低菌根圈细菌多样性,但它们会增加子实体细菌多样性。本研究的结果进一步加深了我们对与它相关的微生物生态学的理解。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/98dd/9978014/32eab847b858/fmicb-14-1074468-g001.jpg

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