Le Cam Steven, Jurczynski Pauline, Jonas Jacques, Koessler Laurent, Colnat-Coulbois Sophie, Ranta Radu
Université de Lorraine, CNRS, CRAN, F-54000 Nancy, France.
Université de Lorraine, CHRU-Nancy, Service de neurologie, F-54000 Nancy, France.
J Neural Eng. 2023 Mar 31;20(2). doi: 10.1088/1741-2552/acc210.
The aim of this paper is to present a novel method for simultaneous spike waveforms extraction and sorting from the raw recorded signal. The objective is twofold: on the one hand, to enhance spike sorting performance by extracting the spike waveforms of each spike and, on the other hand, to improve the analysis of the multi-scale relationships between spikes and local field potentials (LFP) by offering an accurate separation of these two components constitutive of the raw micro recordings.The method, based on a Bayesian approach, is fully automated and provides a mean spike shape for each cluster, but also an estimate for each singular spike waveform, as well as the LFP signal cleaned of spiking activity.The performance of the algorithm is evaluated on simulated and real data, for which both the clustering and spike removal aspects are analyzed. Clustering performance significantly increases when compared to state-of-the-art methods, taking benefit from the separation of the spikes from the LFP handled by our model. Our method also performs better in removing the spikes from the LFP when compared to previously proposed methodologies, especially in the high frequency bands. The method is finally applied on real data (ClinicalTrials.gov Identifier: NCT02877576) and confirm the results obtained on benchmark signals.By separating more efficiently the spikes from the LFP background, our method allows both a better spike sorting and a more accurate estimate of the LFP, facilitating further analysis such as spike-LFP relationships.
本文旨在提出一种从原始记录信号中同时提取和分类尖峰波形的新方法。目标有两个:一方面,通过提取每个尖峰的波形来提高尖峰分类性能;另一方面,通过准确分离构成原始微记录的这两个成分,改善对尖峰与局部场电位(LFP)之间多尺度关系的分析。该方法基于贝叶斯方法,完全自动化,为每个簇提供平均尖峰形状,还为每个单个尖峰波形提供估计值,以及去除尖峰活动后的LFP信号。在模拟数据和真实数据上评估了该算法的性能,并对聚类和尖峰去除方面进行了分析。与现有方法相比,聚类性能显著提高,这得益于我们的模型对尖峰与LFP的分离。与先前提出的方法相比,我们的方法在从LFP中去除尖峰方面也表现得更好,尤其是在高频段。该方法最终应用于真实数据(ClinicalTrials.gov标识符:NCT02877576),并证实了在基准信号上获得的结果。通过更有效地从LFP背景中分离尖峰,我们的方法既能实现更好的尖峰分类,又能更准确地估计LFP,便于进行诸如尖峰-LFP关系等进一步分析。