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针对LpxA的潜在治疗性分子的鉴定与优先级排序——一项计算研究

Identification and prioritization of potential therapeutic molecules against LpxA from - A computational study.

作者信息

Khan Rameez Jabeer, Singh Ekampreet, Jha Rajat Kumar, Kumar Ankit, Bhati Saurabh Kumar, Zia Mahrukh Parveez, Jain Monika, Singh Rashmi Prabha, Muthukumaran Jayaraman, Singh Amit Kumar

机构信息

Department of Biotechnology, School of Engineering and Technology, Sharda University, Greater Noida, U.P, India.

Department of Biotechnology, IILM College of Engineering & Technology, Greater Noida, U.P, India.

出版信息

Curr Res Struct Biol. 2023 Feb 15;5:100096. doi: 10.1016/j.crstbi.2023.100096. eCollection 2023.

Abstract

A. baumannii is a ubiquitously found gram-negative, multi-drug resistant bacterial species from the ESKAPE family of pathogens known to be the causative agent for hospital-acquired infections such as pneumonia, meningitis, endocarditis, septicaemia and urinary tract infections. is implicated as a contributor to bloodstream infections in approximately 2% of all worldwide infections. Hence, exploring novel therapeutic agents against the bacterium is essential. LpxA or UDP--acetylglucosamine acetyltransferase is an essential enzyme important in Lipid A biosynthesis which catalyses the reversible transfer of an acetyl group on the glucosamine 3-OH of the UDP-GlcNAc which is a crucial step in the biosynthesis of the protective Lipopolysaccharides (LPS) layer of the bacteria which upon disruption can lead to the elimination of the bacterium which delineates LpxA as an appreciable drug target from . The present study performs high throughput virtual screening of LpxA against the enamine-HTSC-large-molecule library and performs toxicity and ADME screening to identify the three promising lead molecules subjected to molecular dynamics simulations. Global and essential dynamics analysis of LpxA and its complexes along with FEL and MM/PBSA based binding free energy delineate Z367461724 and Z219244584 as potential inhibitors against LpxA from .

摘要

鲍曼不动杆菌是一种广泛存在的革兰氏阴性、多重耐药细菌,属于ESKAPE病原菌家族,已知是医院获得性感染的病原体,如肺炎、脑膜炎、心内膜炎、败血症和尿路感染。在全球所有感染中,约2%的血流感染与之有关。因此,探索针对该细菌的新型治疗药物至关重要。LpxA或UDP-N-乙酰葡糖胺乙酰转移酶是脂质A生物合成中一种重要的必需酶,它催化UDP-GlcNAc的葡糖胺3-OH上乙酰基的可逆转移,这是细菌保护性脂多糖(LPS)层生物合成中的关键步骤,该层被破坏会导致细菌死亡,这使得LpxA成为一个重要的药物靶点。本研究针对烯胺-高通量筛选化合物库对LpxA进行了高通量虚拟筛选,并进行了毒性和药物代谢及药物动力学筛选,以鉴定出三个有前景的先导分子,并对其进行分子动力学模拟。基于FEL和MM/PBSA的结合自由能对LpxA及其复合物进行全局和必需动力学分析,确定Z367461724和Z219244584为潜在的LpxA抑制剂。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b79a/9988473/65eeeab51e73/ga1.jpg

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