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靶向转移小生境:黄金时期的单细胞谱系追踪

Targeting the metastatic niche: Single-cell lineage tracing in prime time.

作者信息

Sommer Elijah R, Napoli Giulia C, Chau Cindy H, Price Douglas K, Figg William D

机构信息

Molecular Pharmacology Section, Genitourinary Malignancies Branch, Center for Cancer Research, National Cancer Institute, National Institutes of Health, Bethesda, MD 20892, USA.

出版信息

iScience. 2023 Feb 10;26(3):106174. doi: 10.1016/j.isci.2023.106174. eCollection 2023 Mar 17.

DOI:10.1016/j.isci.2023.106174
PMID:36895653
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC9988656/
Abstract

Identification of actionable drug targets remains a rate-limiting step of, and one of the most prominent barriers to successful drug development for metastatic cancers. CRISPR-Cas9, a tool for making targeted genomic edits, has given rise to various novel applications that have greatly accelerated discovery in developmental biology. Recent work has coupled a CRISPR-Cas9-based lineage tracing platform with single-cell transcriptomics in the unexplored context of cancer metastasis. In this perspective, we briefly reflect on the development of these distinct technological advances and the process by which they have become integrated. We also highlight the importance of single-cell lineage tracing in oncology drug development and suggest the profound capacity of a high-resolution, computational approach to reshape cancer drug discovery by enabling identification of novel metastasis-specific drug targets and mechanisms of resistance.

摘要

确定可作用的药物靶点仍然是转移性癌症成功药物开发的限速步骤之一,也是最突出的障碍之一。CRISPR-Cas9是一种用于进行靶向基因组编辑的工具,它催生了各种新应用,极大地加速了发育生物学领域的发现。最近的研究工作将基于CRISPR-Cas9的谱系追踪平台与单细胞转录组学相结合,应用于尚未探索的癌症转移领域。从这个角度出发,我们简要回顾了这些不同技术进展的发展历程以及它们整合的过程。我们还强调了单细胞谱系追踪在肿瘤学药物开发中的重要性,并指出高分辨率计算方法通过识别新的转移特异性药物靶点和耐药机制,具有重塑癌症药物发现的巨大潜力。

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Advancements in prospective single-cell lineage barcoding and their applications in research.前瞻性单细胞谱系条形码技术的进展及其在研究中的应用。

本文引用的文献

1
Evolution of metastasis: new tools and insights.转移的进化:新工具和新见解。
Trends Cancer. 2022 Feb;8(2):98-109. doi: 10.1016/j.trecan.2021.11.002. Epub 2021 Dec 3.
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From bulk, single-cell to spatial RNA sequencing.从批量、单细胞到空间 RNA 测序。
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Deciphering intratumoral heterogeneity using integrated clonal tracking and single-cell transcriptome analyses.利用整合的克隆追踪和单细胞转录组分析破译肿瘤内异质性。
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A Comparison for Dimensionality Reduction Methods of Single-Cell RNA-seq Data.单细胞RNA测序数据降维方法的比较
Front Genet. 2021 Mar 23;12:646936. doi: 10.3389/fgene.2021.646936. eCollection 2021.
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Single-cell lineages reveal the rates, routes, and drivers of metastasis in cancer xenografts.单细胞谱系揭示了癌症异种移植中转移的速率、途径和驱动因素。
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Endocytosis: a pivotal pathway for regulating metastasis.内吞作用:调控转移的关键途径。
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