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泛癌分析揭示了三个 lncRNAs 在多种肿瘤中的功能相似性。

Pan-Cancer Analysis Reveals Functional Similarity of Three lncRNAs across Multiple Tumors.

机构信息

School of Biotechnology and Biomolecular Sciences, Faculty of Science, University of New South Wales, Sydney, NSW 2052, Australia.

UNSW Data Science Hub, University of New South Wales, Sydney, NSW 2052, Australia.

出版信息

Int J Mol Sci. 2023 Mar 1;24(5):4796. doi: 10.3390/ijms24054796.

Abstract

Long non-coding RNAs (lncRNAs) are emerging as key regulators in many biological processes. The dysregulation of lncRNA expression has been associated with many diseases, including cancer. Mounting evidence suggests lncRNAs to be involved in cancer initiation, progression, and metastasis. Thus, understanding the functional implications of lncRNAs in tumorigenesis can aid in developing novel biomarkers and therapeutic targets. Rich cancer datasets, documenting genomic and transcriptomic alterations together with advancement in bioinformatics tools, have presented an opportunity to perform pan-cancer analyses across different cancer types. This study is aimed at conducting a pan-cancer analysis of lncRNAs by performing differential expression and functional analyses between tumor and non-neoplastic adjacent samples across eight cancer types. Among dysregulated lncRNAs, seven were shared across all cancer types. We focused on three lncRNAs, found to be consistently dysregulated among tumors. It has been observed that these three lncRNAs of interest are interacting with a wide range of genes across different tissues, yet enriching substantially similar biological processes, found to be implicated in cancer progression and proliferation.

摘要

长非编码 RNA(lncRNA)在许多生物过程中作为关键调节剂而出现。lncRNA 表达的失调与许多疾病有关,包括癌症。越来越多的证据表明 lncRNA 参与癌症的发生、进展和转移。因此,了解 lncRNA 在肿瘤发生中的功能意义有助于开发新的生物标志物和治疗靶点。丰富的癌症数据集,记录基因组和转录组的改变以及生物信息学工具的进步,为在不同癌症类型中进行泛癌症分析提供了机会。本研究旨在通过对八种癌症类型的肿瘤和非肿瘤相邻样本之间的差异表达和功能分析,对 lncRNA 进行泛癌症分析。在失调的 lncRNA 中,有七个在所有癌症类型中都存在。我们关注了三个在肿瘤中一直失调的 lncRNA。已经观察到这三个感兴趣的 lncRNA 与不同组织中的广泛基因相互作用,但显著富集相似的生物学过程,这些过程被发现与癌症的进展和增殖有关。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/fdc9/10003012/47b61db5d2b0/ijms-24-04796-g006.jpg

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