Department of Hematology, Second Affiliated Hospital of Dalian Medical University, Dalian, 116044, China.
Department of General Surgery, Affiliated Zhongshan Hospital of Dalian University, Dalian, 116300, China.
Sci Rep. 2023 Mar 11;13(1):4060. doi: 10.1038/s41598-023-30695-9.
As one member of fatty acid binding proteins (FABPs), FABP5 makes a contribution in the occurrence and development of several tumor types, but existing analysis about FABP5 and FABP5-related molecular mechanism remains limited. Meanwhile, some tumor patients showed limited response rates to current immunotherapy, and more potential targets need to be explored for the improvement of immunotherapy. In this study, we made a pan-cancer analysis of FABP5 based on the clinical data from The Cancer Genome Atlas database for the first time. FABP5 overexpression was observed in many tumor types, and was statistically associated with poor prognosis of several tumor types. Additionally, we further explored FABP5-related miRNAs and corresponding lncRNAs. Then, miR-577-FABP5 regulatory network in kidney renal clear cell carcinoma as well as CD27-AS1/GUSBP11/SNHG16/TTC28-AS1-miR-22-3p-FABP5 competing endogenous RNA regulatory network in liver hepatocellular carcinoma were constructed. Meanwhile, Western Blot and reverse transcription quantitative real-time polymerase chain reaction (RT-qPCR) analysis were used to verify miR-22-3p-FABP5 relationship in LIHC cell lines. Moreover, the potential relationships of FABP5 with immune infiltration and six immune checkpoints (CD274, CTLA4, HAVCR2, LAG3, PDCD1 and TIGIT) were discovered. Our work not only deepens the understanding of FABP5's functions in multiple tumors and supplements existing FABP5-related mechanisms, but also provides more possibilities for immunotherapy.
作为脂肪酸结合蛋白(FABP)家族的一员,FABP5 在多种肿瘤类型的发生和发展中发挥作用,但目前对 FABP5 及其相关分子机制的分析仍然有限。同时,一些肿瘤患者对当前的免疫疗法反应有限,需要探索更多潜在的靶点来改善免疫疗法。在这项研究中,我们首次基于癌症基因组图谱(TCGA)数据库中的临床数据对 FABP5 进行了泛癌分析。结果表明,FABP5 在许多肿瘤类型中过表达,与几种肿瘤类型的不良预后统计学相关。此外,我们进一步探讨了 FABP5 相关的 miRNA 和相应的 lncRNA。然后,构建了肾透明细胞癌中 miR-577-FABP5 调控网络和肝癌中 CD27-AS1/GUSBP11/SNHG16/TTC28-AS1-miR-22-3p-FABP5 竞争性内源 RNA 调控网络。同时,使用 Western Blot 和逆转录定量实时聚合酶链反应(RT-qPCR)分析验证了 LIHC 细胞系中 miR-22-3p-FABP5 的关系。此外,还发现了 FABP5 与免疫浸润和六个免疫检查点(CD274、CTLA4、HAVCR2、LAG3、PDCD1 和 TIGIT)的潜在关系。我们的工作不仅加深了对 FABP5 在多种肿瘤中功能的理解,补充了现有的 FABP5 相关机制,还为免疫疗法提供了更多的可能性。