Yang Jingqi, Yang Ming, Sheng Guotai
Department of Cardiovascular Medicine, Jiangxi Provincial People's Hospital, The First Affiliated Hospital of Nanchang Medical College, Nanchang, 330000, China.
Open Med (Wars). 2023 Mar 8;18(1):20230657. doi: 10.1515/med-2023-0657. eCollection 2023.
Long noncoding RNAs (lncRNAs) mediate important epigenetic regulation in a wide range of biological processes. However, the effect of all dysregulated lncRNAs in myocardial infarction (MI) is not clear. Whole transcriptome sequencing analysis was used to characterize the dynamic changes in lncRNA and mRNA expression. A gene network was constructed, and genes were classified into different modules using WGCNA. In addition, for all dysregulated lncRNAs, gene ontology analysis and -regulatory analysis were applied. The results demonstrated that a large number of the differentially co-expressed genes were primarily linked to the immune system process, inflammatory response, and innate immune response. The functional pathway analysis of the MEblue module included immune system process and apoptosis, and MEbrown included the T-cell receptor signal pathway by WGCNA. In addition, through -acting analysis of lncRNA regulation, the -regulated mRNAs were mainly enriched in immune system processes, innate immune responses, and VEGF signal pathways. We found that lncRNA regulation of mRNAs plays an important role in immune and inflammatory pathways. Our study provides a foundation to further understand the role and potential mechanism of dysregulated lncRNAs in the regulation of MI, in which many of them could be potential targets for MI.
长链非编码RNA(lncRNAs)在广泛的生物过程中介导重要的表观遗传调控。然而,所有失调的lncRNAs在心肌梗死(MI)中的作用尚不清楚。采用全转录组测序分析来表征lncRNA和mRNA表达的动态变化。构建了一个基因网络,并使用WGCNA将基因分类到不同的模块中。此外,对所有失调的lncRNAs进行了基因本体分析和调控分析。结果表明,大量差异共表达基因主要与免疫系统过程、炎症反应和先天免疫反应相关。通过WGCNA分析,MEblue模块的功能通路分析包括免疫系统过程和凋亡,MEbrown模块包括T细胞受体信号通路。此外,通过lncRNA调控的反式作用分析,受lncRNA调控的mRNA主要富集在免疫系统过程、先天免疫反应和VEGF信号通路中。我们发现lncRNA对mRNA的调控在免疫和炎症通路中起重要作用。我们的研究为进一步了解失调的lncRNAs在MI调控中的作用和潜在机制提供了基础,其中许多lncRNAs可能是MI的潜在靶点。