从苏丹破裂的食用蛋中分离出的血清型序列类型8877的全基因组序列数据。
Whole-genome sequence data of a serovar sequence type 8877 isolated from cracked table egg in Sudan.
作者信息
Elhassan Mortada M O, Adam Habiba B A, Fagir Shaimaa S A O, Mohamed Sofia B, Khaier Mona A M, Abdulaziz Romisa, Ismail Arshad, Allam Mushal
机构信息
College of Veterinary Medicine, University of Bahri, Khartoum, Sudan.
National University Biomedical Research Institute National University, Khartoum, Sudan.
出版信息
Data Brief. 2023 Feb 23;47:109005. doi: 10.1016/j.dib.2023.109005. eCollection 2023 Apr.
serovar is an emerging and important serovar prevalent in live animals and foods from retail markets worldwide. Here, we describe the whole-genome sequence of Serovar Sequence Type 8877 isolated from a cracked table egg in Sudan. The whole-genome sequencing was obtained using Illumina Miseq platform. The quality of the sequenced read, the De novo assembly, and the sequencing typing was conducted by JEKESA pipeline (https://github.com/stanikae/jekesa). The assembled genome was also uploaded to the Center for Genomic Epidemiology web server to determine acquired antibiotic resistance genes, predict the serovar, and the antigenic profile. The genome of serovar 1-M1 was found to harbor 4,689 protein-coding genes, 96 RNA genes, and 115 pseudogenes, as predicted by NCBI Prokaryotic Genome Annotation Pipeline. This whole genome shotgun project has been deposited at DDBJ/ENA/GenBank under accession JAPSFB000000000.
血清型是一种新兴且重要的血清型，在全球零售市场的活体动物和食品中普遍存在。在此，我们描述了从苏丹一个破裂的食用蛋中分离出的血清型序列类型8877的全基因组序列。全基因组测序使用Illumina Miseq平台完成。测序读数的质量、从头组装以及测序分型由JEKESA管道（https://github.com/stanikae/jekesa）进行。组装好的基因组也上传到了基因组流行病学中心的网络服务器，以确定获得性抗生素耐药基因、预测血清型和抗原谱。根据NCBI原核生物基因组注释管道预测，血清型1-M1的基因组含有4689个蛋白质编码基因、96个RNA基因和115个假基因。这个全基因组鸟枪法测序项目已存入DDBJ/ENA/GenBank，登录号为JAPSFB000000000。
Zotero 插件