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用基于机理的密度泛函理论辅助算法定量预测脱硼化反应速率。

Quantitative Prediction of the Rate of Protodeboronation by a Mechanistic Density Functional Theory-Aided Algorithm.

机构信息

Department of Chemical Engineering and Biotechnology, University of Cambridge, CB3 0AS Cambridge, U.K.

UCB Biopharma SPRL, 1420 Braine l'Alleud, Belgium.

出版信息

J Phys Chem A. 2023 Mar 23;127(11):2628-2636. doi: 10.1021/acs.jpca.2c08250. Epub 2023 Mar 14.

Abstract

Computational reaction prediction has become a ubiquitous task in chemistry due to the potential value accurate predictions can bring to chemists. Boronic acids are widely used in industry; however, understanding how to avoid the protodeboronation side reaction remains a challenge. We have developed an algorithm for prediction of the rate of protodeboronation of boronic acids. A general mechanistic model devised through kinetic studies of protodeboronation was found in the literature and forms the foundation on which the algorithm presented in this work is built. Protodeboronation proceeds through 7 distinct pathways, though for any particular boronic acid, only a subset of mechanistic pathways are active. The rate of each active mechanistic pathway is linearly correlated with its characteristic energy difference, which in turn can be determined using Density Functional Theory. We validated the algorithm using leave-one-out cross-validation on a data set of 50 boronic acids and made a further 50 rate predictions on academically and industrially important boronic acids out of sample. We believe this work will provide great assistance to chemists performing reactions that feature boronic acids, such as Suzuki-Miyaura and Chan-Evans-Lam couplings.

摘要

由于准确预测能给化学家带来潜在价值,计算反应预测已成为化学领域中无处不在的任务。硼酸广泛应用于工业领域;然而,了解如何避免硼酸的脱硼基副反应仍然是一个挑战。我们已经开发了一种用于预测硼酸脱硼基速率的算法。通过对脱硼基动力学研究设计的通用机理模型在文献中被发现,并构成了本文所提出算法的基础。脱硼基反应通过 7 个不同的途径进行,尽管对于任何特定的硼酸,只有一部分机理途径是活跃的。每个活跃的机理途径的速率与其特征能量差呈线性相关,而特征能量差反过来可以使用密度泛函理论确定。我们使用 50 个硼酸的留一交叉验证数据集对算法进行了验证,并对 50 个在学术和工业上重要的硼酸进行了进一步的不在样本中的速率预测。我们相信这项工作将为进行涉及硼酸的反应(如 Suzuki-Miyaura 和 Chan-Evans-Lam 偶联反应)的化学家提供极大的帮助。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/387c/10041635/183891a88409/jp2c08250_0007.jpg

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