• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

建立并验证与代谢相关的基因标志物,用于预测肝细胞癌的预后。

Development and validation of robust metabolism-related gene signature in the prognostic prediction of hepatocellular carcinoma.

机构信息

Department of Liver Surgery, State Key Laboratory of Oncology in South China, Sun Yat-sen University Cancer Center, Sun Yat-sen University, Guangzhou, China.

Hepatobiliary Center, The First Affiliated Hospital of Nanjing Medical University & Research Unit of Liver Transplantation and Transplant Immunology, Chinese Academy of Medical Sciences, Nanjing, China.

出版信息

J Cell Mol Med. 2023 Apr;27(7):1006-1020. doi: 10.1111/jcmm.17718. Epub 2023 Mar 15.

DOI:10.1111/jcmm.17718
PMID:36919714
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC10064027/
Abstract

Hepatocellular carcinoma (HCC) is one of the most common malignant tumours worldwide. Given metabolic reprogramming in tumours was a crucial hallmark, several studies have demonstrated its value in the diagnostics and surveillance of malignant tumours. The present study aimed to identify a cluster of metabolism-related genes to construct a prediction model for the prognosis of HCC. Multiple cohorts of HCC cases (466 cases) from public datasets were included in the present analysis. (GEO cohort) After identifying a list of metabolism-related genes associated with prognosis, a risk score based on metabolism-related genes was formulated via the LASSO-Cox and LASSO-pcvl algorithms. According to the risk score, patients were stratified into low- and high-risk groups, and further analysis and validation were accordingly conducted. The results revealed that high-risk patients had a significantly worse 5-year overall survival (OS) than low-risk patients in the GEO cohort. (30.0% vs. 57.8%; hazard ratio [HR], 0.411; 95% confidence interval [95% CI], 0.302-0.651; p < 0.001) This observation was confirmed in the external TCGA-LIHC cohort. (34.5% vs. 54.4%; HR 0.452; 95% CI, 0.299-0.681; p < 0.001) To promote the predictive ability of the model, risk score, age, gender and tumour stage were integrated into a nomogram. According to the results of receiver operating characteristic curves and decision curves analysis, the nomogram score possessed a superior predictive ability than conventional factors, which indicate that the risk score combined with clinicopathological features was able to achieve a robust prediction for OS and improve the individualized clinical decision making of HCC patients. In conclusion, the metabolic genes related to OS were identified and developed a metabolism-based predictive model for HCC. Through a series of bioinformatics and statistical analyses, the predictive ability of the model was approved.

摘要

肝细胞癌(HCC)是全球最常见的恶性肿瘤之一。鉴于肿瘤的代谢重编程是一个关键标志,因此有几项研究已经证明了其在恶性肿瘤的诊断和监测中的价值。本研究旨在确定一组与代谢相关的基因,以构建 HCC 预后预测模型。本分析纳入了来自公共数据集的多个 HCC 病例队列(466 例)。(GEO 队列)在确定与预后相关的一系列代谢相关基因后,通过 LASSO-Cox 和 LASSO-pcvl 算法制定了基于代谢相关基因的风险评分。根据风险评分,将患者分为低风险和高风险组,并进行进一步的分析和验证。结果表明,在 GEO 队列中,高风险患者的 5 年总生存率(OS)明显低于低风险患者(30.0% vs. 57.8%;风险比[HR],0.411;95%置信区间[95%CI],0.302-0.651;p<0.001)。这一观察结果在外部 TCGA-LIHC 队列中得到了证实(34.5% vs. 54.4%;HR 0.452;95%CI,0.299-0.681;p<0.001)。为了提高模型的预测能力,将风险评分、年龄、性别和肿瘤分期整合到一个列线图中。根据受试者工作特征曲线和决策曲线分析的结果,列线图评分具有优于传统因素的预测能力,这表明风险评分与临床病理特征相结合能够对 OS 进行稳健预测,并改善 HCC 患者的个体化临床决策。总之,本研究确定了与 OS 相关的代谢基因,并开发了一种基于代谢的 HCC 预测模型。通过一系列生物信息学和统计分析,验证了该模型的预测能力。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/659f/10064027/c4971284b955/JCMM-27-1006-g008.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/659f/10064027/a37aae0c7afd/JCMM-27-1006-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/659f/10064027/43c26e884be3/JCMM-27-1006-g007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/659f/10064027/10de390c9b5b/JCMM-27-1006-g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/659f/10064027/3e8d87e11872/JCMM-27-1006-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/659f/10064027/4e3314aa6932/JCMM-27-1006-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/659f/10064027/1db4ce1ad7a8/JCMM-27-1006-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/659f/10064027/dfd939ab6acf/JCMM-27-1006-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/659f/10064027/c4971284b955/JCMM-27-1006-g008.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/659f/10064027/a37aae0c7afd/JCMM-27-1006-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/659f/10064027/43c26e884be3/JCMM-27-1006-g007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/659f/10064027/10de390c9b5b/JCMM-27-1006-g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/659f/10064027/3e8d87e11872/JCMM-27-1006-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/659f/10064027/4e3314aa6932/JCMM-27-1006-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/659f/10064027/1db4ce1ad7a8/JCMM-27-1006-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/659f/10064027/dfd939ab6acf/JCMM-27-1006-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/659f/10064027/c4971284b955/JCMM-27-1006-g008.jpg

相似文献

1
Development and validation of robust metabolism-related gene signature in the prognostic prediction of hepatocellular carcinoma.建立并验证与代谢相关的基因标志物,用于预测肝细胞癌的预后。
J Cell Mol Med. 2023 Apr;27(7):1006-1020. doi: 10.1111/jcmm.17718. Epub 2023 Mar 15.
2
Construction and Validation of a Prognostic Gene-Based Model for Overall Survival Prediction in Hepatocellular Carcinoma Using an Integrated Statistical and Bioinformatic Approach.基于统计与生物信息学综合分析方法构建并验证用于预测肝细胞癌患者总生存期的预后基因模型
Int J Mol Sci. 2021 Feb 5;22(4):1632. doi: 10.3390/ijms22041632.
3
Development and validation of metabolism-related gene signature in prognostic prediction of gastric cancer.用于胃癌预后预测的代谢相关基因特征的开发与验证
Comput Struct Biotechnol J. 2020 Oct 17;18:3217-3229. doi: 10.1016/j.csbj.2020.09.037. eCollection 2020.
4
Development of a macrophages-related 4-gene signature and nomogram for the overall survival prediction of hepatocellular carcinoma based on WGCNA and LASSO algorithm.基于 WGCNA 和 LASSO 算法构建巨噬细胞相关的 4 基因signature 及列线图预测肝细胞癌患者总生存期
Int Immunopharmacol. 2021 Jan;90:107238. doi: 10.1016/j.intimp.2020.107238. Epub 2020 Dec 11.
5
A necroptosis-related gene signature for predicting prognosis, immune landscape, and drug sensitivity in hepatocellular carcinoma.一个与坏死性凋亡相关的基因特征,可用于预测肝细胞癌的预后、免疫图谱和药物敏感性。
Cancer Med. 2022 Dec;11(24):5079-5096. doi: 10.1002/cam4.4812. Epub 2022 May 13.
6
Normal tissue adjacent to tumor expression profile analysis developed and validated a prognostic model based on Hippo-related genes in hepatocellular carcinoma.分析肿瘤相邻正常组织的表达谱,建立并验证了一个基于 Hippo 相关基因的肝细胞癌预后模型。
Cancer Med. 2021 May;10(9):3139-3152. doi: 10.1002/cam4.3890. Epub 2021 Apr 4.
7
Development and validation of a robust epithelial-mesenchymal transition (EMT)-related prognostic signature for hepatocellular carcinoma.一种用于肝细胞癌的稳健的上皮-间质转化(EMT)相关预后标志物的开发与验证
Clin Res Hepatol Gastroenterol. 2021 Sep;45(5):101587. doi: 10.1016/j.clinre.2020.101587. Epub 2021 Mar 1.
8
A novel prognostic signature based on four glycolysis-related genes predicts survival and clinical risk of hepatocellular carcinoma.基于四个糖酵解相关基因的新型预后标志物可预测肝细胞癌的生存和临床风险。
J Clin Lab Anal. 2021 Nov;35(11):e24005. doi: 10.1002/jcla.24005. Epub 2021 Sep 15.
9
The pyroptosis-related gene signature predicts prognosis and indicates immune activity in hepatocellular carcinoma.焦亡相关基因特征可预测肝细胞癌的预后,并提示免疫活性。
Mol Med. 2022 Feb 5;28(1):16. doi: 10.1186/s10020-022-00445-0.
10
Screening and identification of angiogenesis-related genes as potential novel prognostic biomarkers of hepatocellular carcinoma through bioinformatics analysis.通过生物信息学分析筛选和鉴定与血管生成相关的基因作为肝细胞癌潜在的新型预后生物标志物。
Aging (Albany NY). 2021 Jul 12;13(13):17707-17733. doi: 10.18632/aging.203260.

引用本文的文献

1
Molecular Pathway and Immune Profile Analysis of IPMN-Derived Versus PanIN-Derived Pancreatic Ductal Adenocarcinomas.胰腺导管腺癌起源于导管内乳头状黏液性肿瘤(IPMN)与起源于胰腺上皮内瘤变(PanIN)的分子通路及免疫特征分析
Int J Mol Sci. 2024 Dec 7;25(23):13164. doi: 10.3390/ijms252313164.
2
Nomogram built based on machine learning to predict recurrence in early-stage hepatocellular carcinoma patients treated with ablation.基于机器学习构建的列线图,用于预测接受消融治疗的早期肝细胞癌患者的复发情况。
Front Oncol. 2024 May 10;14:1395329. doi: 10.3389/fonc.2024.1395329. eCollection 2024.

本文引用的文献

1
Targeting uridine-cytidine kinase 2 induced cell cycle arrest through dual mechanism and could improve the immune response of hepatocellular carcinoma.靶向尿苷-胞苷激酶 2 通过双重机制诱导细胞周期停滞,并能提高肝癌的免疫反应。
Cell Mol Biol Lett. 2022 Nov 26;27(1):105. doi: 10.1186/s11658-022-00403-y.
2
Loss of phospholipase Cγ1 suppresses hepatocellular carcinogenesis through blockade of STAT3-mediated cancer development.磷脂酶 Cγ1 的缺失通过阻断 STAT3 介导的癌症发展来抑制肝细胞癌发生。
Hepatol Commun. 2022 Nov;6(11):3234-3246. doi: 10.1002/hep4.2077. Epub 2022 Sep 25.
3
Circulating biomarkers in the diagnosis and management of hepatocellular carcinoma.
循环生物标志物在肝细胞癌的诊断和治疗中的应用。
Nat Rev Gastroenterol Hepatol. 2022 Oct;19(10):670-681. doi: 10.1038/s41575-022-00620-y. Epub 2022 Jun 8.
4
Prognosis and Dissection of Immunosuppressive Microenvironment in Breast Cancer Based on Fatty Acid Metabolism-Related Signature.基于脂肪酸代谢相关特征的乳腺癌免疫抑制微环境的预后与剖析
Front Immunol. 2022 Mar 31;13:843515. doi: 10.3389/fimmu.2022.843515. eCollection 2022.
5
T-cell exhaustion and residency dynamics inform clinical outcomes in hepatocellular carcinoma.T 细胞耗竭和驻留动力学为肝细胞癌的临床结局提供信息。
J Hepatol. 2022 Aug;77(2):397-409. doi: 10.1016/j.jhep.2022.02.032. Epub 2022 Apr 1.
6
Identification and Validation of a Novel Six-Gene Expression Signature for Predicting Hepatocellular Carcinoma Prognosis.鉴定和验证一种新型的六基因表达谱用于预测肝细胞癌预后。
Front Immunol. 2021 Dec 1;12:723271. doi: 10.3389/fimmu.2021.723271. eCollection 2021.
7
Development and validation of a novel lipid metabolism-related gene prognostic signature and candidate drugs for patients with bladder cancer.开发和验证一种新型的与脂质代谢相关的基因预后标志物,并为膀胱癌患者找到候选药物。
Lipids Health Dis. 2021 Oct 27;20(1):146. doi: 10.1186/s12944-021-01554-1.
8
Prognostic Values of Alpha-Fetoprotein and Des-Gamma-Carboxyprothrombin in Hepatocellular Carcinoma in China: An Analysis of 4792 Patients.甲胎蛋白和异常凝血酶原在中国肝细胞癌中的预后价值:4792例患者分析
J Hepatocell Carcinoma. 2021 Jun 25;8:657-670. doi: 10.2147/JHC.S316223. eCollection 2021.
9
Molecular subtype identification and prognosis stratification by a metabolism-related gene expression signature in colorectal cancer.基于代谢相关基因表达特征的结直肠癌分子亚型鉴定和预后分层。
J Transl Med. 2021 Jun 30;19(1):279. doi: 10.1186/s12967-021-02952-w.
10
Development and validation of a robust epithelial-mesenchymal transition (EMT)-related prognostic signature for hepatocellular carcinoma.一种用于肝细胞癌的稳健的上皮-间质转化(EMT)相关预后标志物的开发与验证
Clin Res Hepatol Gastroenterol. 2021 Sep;45(5):101587. doi: 10.1016/j.clinre.2020.101587. Epub 2021 Mar 1.