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本文引用的文献

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The Persistence of Bacterial Pathogens in Surface Water and Its Impact on Global Food Safety.细菌病原体在地表水中的持久性及其对全球食品安全的影响。
Pathogens. 2021 Oct 27;10(11):1391. doi: 10.3390/pathogens10111391.
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Prevalence and concentration of stx+ E. coli and E. coli O157 in bovine manure from Florida farms.佛罗里达州农场牛粪中 stx+ 大肠杆菌和大肠杆菌 O157 的流行率和浓度。
PLoS One. 2019 May 24;14(5):e0217445. doi: 10.1371/journal.pone.0217445. eCollection 2019.
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SKESA: strategic k-mer extension for scrupulous assemblies.SKESA：用于严谨组装的策略性 k--mer 扩展。
Genome Biol. 2018 Oct 4;19(1):153. doi: 10.1186/s13059-018-1540-z.
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Identification of Biological Hazards in Produce Consumed in Industrialized Countries: A Review.工业化国家消费的农产品中的生物危害识别：综述。
J Food Prot. 2018 Jul;81(7):1171-1186. doi: 10.4315/0362-028X.JFP-17-465.
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Preharvest Farming Practices Impacting Fresh Produce Safety.采前农业措施对新鲜农产品安全的影响。
Microbiol Spectr. 2018 Apr;6(2). doi: 10.1128/microbiolspec.PFS-0022-2018.
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Importance of Soil Amendments: Survival of Bacterial Pathogens in Manure and Compost Used as Organic Fertilizers.土壤改良剂的重要性：有机肥（如粪肥和堆肥）中细菌病原体的存活。
Microbiol Spectr. 2016 Aug;4(4). doi: 10.1128/microbiolspec.PFS-0010-2015.
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NCBI prokaryotic genome annotation pipeline.美国国立生物技术信息中心原核生物基因组注释管道
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8
Effect of proximity to a cattle feedlot on Escherichia coli O157:H7 contamination of leafy greens and evaluation of the potential for airborne transmission.靠近肉牛饲养场对绿叶蔬菜中大肠杆菌O157:H7污染的影响及空气传播可能性评估
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Kraken: ultrafast metagenomic sequence classification using exact alignments.克拉肯：使用精确比对的超快速宏基因组序列分类
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10
The epidemiology of infections caused by Escherichia coli O157:H7, other enterohemorrhagic E. coli, and the associated hemolytic uremic syndrome.由大肠杆菌O157:H7、其他肠出血性大肠杆菌引起的感染及相关溶血尿毒综合征的流行病学
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从美国南部牛粪样本中分离出的110株产志贺毒素大肠杆菌的基因组序列草图

Draft Genome Sequences of 110 Shiga Toxin-Producing Escherichia coli Isolates Collected from Bovine Manure Samples in the Southern United States.

作者信息

Baker Christopher A, Gutierrez Alan, Bell Rebecca, Schneider Keith R

机构信息

Department of Food Science and Human Nutrition, University of Florida, Gainesville, Florida, USA.

Department of Animal Sciences, Emerging Pathogens Institute, University of Florida, Gainesville, Florida, USA.

出版信息

Microbiol Resour Announc. 2023 Apr 18;12(4):e0117722. doi: 10.1128/mra.01177-22. Epub 2023 Mar 15.

DOI:10.1128/mra.01177-22
PMID:36920193
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC10112231/
Abstract

Shiga toxin-producing Escherichia coli (STEC) bacteria continue to impact the food industry. Environmental sampling of potential sources of contamination is important to aid epidemiologic efforts in tracking foodborne illnesses throughout the United States. Here, the draft genome sequences of 110 STEC isolates from bovine manure collected in Florida and Texas are reported.

摘要

产志贺毒素大肠杆菌（STEC）继续影响着食品行业。对潜在污染源进行环境采样，对于协助在美国追踪食源性疾病的流行病学工作非常重要。在此，报告了从佛罗里达州和得克萨斯州收集的牛粪中分离出的110株STEC菌株的基因组序列草图。