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基于人类心脏转录组探索脓毒症心肌损伤中失调的铁死亡相关基因:证据与新见解

Exploring Dysregulated Ferroptosis-Related Genes in Septic Myocardial Injury Based on Human Heart Transcriptomes: Evidence and New Insights.

作者信息

Zou Hua-Xi, Hu Tie, Zhao Jia-Yi, Qiu Bai-Quan, Zou Chen-Chao, Xu Qi-Rong, Liu Ji-Chun, Lai Song-Qing, Huang Huang

机构信息

Department of Cardiovascular Surgery, The First Affiliated Hospital of Nanchang University, Nanchang, People's Republic of China.

Institute of Cardiovascular Diseases, Jiangxi Academy of Clinical Medical Sciences, The First Affiliated Hospital of Nanchang University, Nanchang, People's Republic of China.

出版信息

J Inflamm Res. 2023 Mar 9;16:995-1015. doi: 10.2147/JIR.S400107. eCollection 2023.

Abstract

INTRODUCTION

Sepsis is currently a common condition in emergency and intensive care units, and is defined as life-threatening organ dysfunction caused by a dysregulated host response to infection. Cardiac dysfunction caused by septic myocardial injury (SMI) is associated with adverse prognosis and has significant economic and human costs. The pathophysiological mechanisms underlying SMI have long been a subject of interest. Recent studies have identified ferroptosis, a form of programmed cell death associated with iron accumulation and lipid peroxidation, as a pathological factor in the development of SMI. However, the current understanding of how ferroptosis functions and regulates in SMI remains limited, particularly in the absence of direct evidence from human heart.

METHODS

We performed a sequential comprehensive bioinformatics analysis of human sepsis cardiac transcriptome data obtained through the GEO database. The lipopolysaccharide-induced mouse SMI model was used to validate the ferroptosis features and transcriptional expression of key genes.

RESULTS

We identified widespread dysregulation of ferroptosis-related genes (FRGs) in SMI based on the human septic heart transcriptomes, deeply explored the underlying biological mechanisms and crosstalks, followed by the identification of key functional modules and hub genes through the construction of protein-protein interaction network. Eight key FRGs that regulate ferroptosis in SMI, including HIF1A, MAPK3, NOX4, PPARA, PTEN, RELA, STAT3 and TP53, were identified, as well as the ferroptosis features. All the key FRGs showed excellent diagnostic capability for SMI, part of them was associated with the prognosis of sepsis patients and the immune infiltration in the septic hearts, and potential ferroptosis-modulating drugs for SMI were predicted based on key FRGs.

CONCLUSION

This study provides human septic heart transcriptome-based evidence and brings new insights into the role of ferroptosis in SMI, which is significant for expanding the understanding of the pathobiological mechanisms of SMI and exploring promising diagnostic and therapeutic targets for SMI.

摘要

引言

脓毒症目前是急诊科和重症监护病房的常见病症,被定义为宿主对感染的反应失调所导致的危及生命的器官功能障碍。脓毒性心肌损伤(SMI)所致的心脏功能障碍与不良预后相关,且造成巨大的经济和人力成本。SMI的病理生理机制长期以来一直是研究热点。最近的研究已确定铁死亡(一种与铁蓄积和脂质过氧化相关的程序性细胞死亡形式)是SMI发生发展中的一个病理因素。然而,目前对于铁死亡在SMI中的作用方式及调控机制的理解仍然有限,尤其是缺乏来自人类心脏的直接证据。

方法

我们对通过基因表达综合数据库(GEO)获得的人类脓毒症心脏转录组数据进行了序列综合生物信息学分析。采用脂多糖诱导的小鼠SMI模型来验证铁死亡特征及关键基因的转录表达。

结果

基于人类脓毒症心脏转录组,我们确定了SMI中铁死亡相关基因(FRGs)的广泛失调,深入探究了潜在的生物学机制和相互作用,随后通过构建蛋白质-蛋白质相互作用网络确定了关键功能模块和枢纽基因。我们鉴定出8个调控SMI中铁死亡的关键FRGs,包括缺氧诱导因子1α(HIF1A)、丝裂原活化蛋白激酶3(MAPK3)、烟酰胺腺嘌呤二核苷酸磷酸氧化酶4(NOX4)、过氧化物酶体增殖物激活受体α(PPARA)、第10号染色体缺失的磷酸酶及张力蛋白同源物(PTEN)、信号转导和转录激活因子3(RELA)、信号转导和转录激活因子3(STAT3)和肿瘤蛋白p53(TP53),以及铁死亡特征。所有关键FRGs对SMI均显示出优异的诊断能力,其中部分与脓毒症患者的预后及脓毒症心脏中的免疫浸润相关,并基于关键FRGs预测了潜在的SMI铁死亡调节药物。

结论

本研究提供了基于人类脓毒症心脏转录组的证据,并为铁死亡在SMI中的作用带来了新见解,这对于拓展对SMI病理生物学机制的理解以及探索有前景的SMI诊断和治疗靶点具有重要意义。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c281/10010745/4b9dda68fc85/JIR-16-995-g0001.jpg

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