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脓毒症性心肌病中自噬相关基因的失调:基于人类转录组的综合生物信息学分析及实验验证

Dysregulated autophagy-related genes in septic cardiomyopathy: Comprehensive bioinformatics analysis based on the human transcriptomes and experimental validation.

作者信息

Zou Hua-Xi, Qiu Bai-Quan, Zhang Ze-Yu, Hu Tie, Wan Li, Liu Ji-Chun, Huang Huang, Lai Song-Qing

机构信息

Department of Cardiovascular Surgery, The First Affiliated Hospital of Nanchang University, Nanchang, China.

Institute of Cardiovascular Diseases, Jiangxi Academy of Clinical Medical Sciences, The First Affiliated Hospital of Nanchang University, Nanchang, China.

出版信息

Front Cardiovasc Med. 2022 Aug 2;9:923066. doi: 10.3389/fcvm.2022.923066. eCollection 2022.

DOI:10.3389/fcvm.2022.923066
PMID:35983185
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC9378994/
Abstract

Septic cardiomyopathy (SCM) is severe organ dysfunction caused by sepsis that is associated with poor prognosis, and its pathobiological mechanisms remain unclear. Autophagy is a biological process that has recently been focused on SCM, yet the current understanding of the role of dysregulated autophagy in the pathogenesis of SCM remains limited and uncertain. Exploring the molecular mechanisms of disease based on the transcriptomes of human pathological samples may bring the closest insights. In this study, we analyzed the differential expression of autophagy-related genes in SCM based on the transcriptomes of human septic hearts, and further explored their potential crosstalk and functional pathways. Key functional module and hub genes were identified by constructing a protein-protein interaction network. Eight key genes (CCL2, MYC, TP53, SOD2, HIF1A, CTNNB1, CAT, and ADIPOQ) that regulate autophagy in SCM were identified after validation in a lipopolysaccharide (LPS)-induced H9c2 cardiomyoblast injury model, as well as the autophagic characteristic features. Furthermore, we found that key genes were associated with abnormal immune infiltration in septic hearts and have the potential to serve as biomarkers. Finally, we predicted drugs that may play a protective role in SCM by regulating autophagy based on our results. Our study provides evidence and new insights into the role of autophagy in SCM based on human septic heart transcriptomes, which would be of great benefit to reveal the molecular pathological mechanisms and explore the diagnostic and therapeutic targets for SCM.

摘要

脓毒症性心肌病(SCM)是由脓毒症引起的严重器官功能障碍,与预后不良相关,其病理生物学机制尚不清楚。自噬是一个最近在SCM研究中受到关注的生物学过程,然而目前对自噬失调在SCM发病机制中的作用的理解仍然有限且不确定。基于人类病理样本的转录组探索疾病的分子机制可能会带来最直接的见解。在本研究中,我们基于人类脓毒症心脏的转录组分析了SCM中自噬相关基因的差异表达,并进一步探索了它们潜在的相互作用和功能途径。通过构建蛋白质-蛋白质相互作用网络鉴定关键功能模块和枢纽基因。在脂多糖(LPS)诱导的H9c2心肌成纤维细胞损伤模型中验证后,鉴定出八个在SCM中调节自噬的关键基因(CCL2、MYC、TP53、SOD2、HIF1A、CTNNB1、CAT和ADIPOQ)以及自噬特征。此外,我们发现关键基因与脓毒症心脏中的异常免疫浸润相关,并且有可能作为生物标志物。最后,我们根据研究结果预测了可能通过调节自噬在SCM中发挥保护作用的药物。我们的研究基于人类脓毒症心脏转录组为自噬在SCM中的作用提供了证据和新见解,这将极大地有助于揭示SCM的分子病理机制并探索其诊断和治疗靶点。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/68d5/9378994/f89edd556a88/fcvm-09-923066-g009.jpg
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