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一株野生采集的(红藻门,红翎菜科)的完整线粒体基因组。

The complete mitochondrial genome of a wild-collected (Solieriaceae, Rhodophyta).

作者信息

Crisostomo Bea A, Dumilag Richard V, Roleda Michael Y, Lluisma Arturo O

机构信息

The Marine Science Institute, College of Science, University of the Philippines, Diliman, Quezon City, Philippines.

Fisheries Department, Sorsogon State University, Magallanes Campus, Aguada Norte, Magallanes, Sorsogon, Philippines.

出版信息

Mitochondrial DNA B Resour. 2023 Mar 10;8(3):359-363. doi: 10.1080/23802359.2023.2183728. eCollection 2023.

Abstract

is a red seaweed farmed primarily for its carrageenan, a polysaccharide important in the food and pharmaceutical industries. Among the commercially cultivated species, only has no mitogenome data available. Here, we assembled the mitochondrial genome of from next-generation sequencing data. The circular mitogenome consisted of 25,250 base pairs (bp) with a GC content of 30.25%. These values were comparable to previously sequenced solieriacean mitogenomes. Structural features, such as the stem-loop and hairpin, which were previously reported in other rhodophytes mitochondrial DNA, were also identified. The annotated genes (24 protein-coding genes, 24 tRNA genes, and 2 rRNA genes) were arranged in an order similar to the other available solieriacean mitogenomes. Lastly, phylogenetic analysis using 23 predicted protein domains showed the sister relationship of with other species.

摘要

是一种主要因其卡拉胶而养殖的红藻,卡拉胶是一种在食品和制药行业中很重要的多糖。在商业养殖的物种中,只有没有可用的有丝分裂基因组数据。在这里,我们从下一代测序数据中组装了的线粒体基因组。环状线粒体基因组由25250个碱基对(bp)组成,GC含量为30.25%。这些值与先前测序的索藻科线粒体基因组相当。还鉴定出了先前在其他红藻线粒体DNA中报道的茎环和发夹等结构特征。注释基因(24个蛋白质编码基因、24个tRNA基因和2个rRNA基因)的排列顺序与其他可用的索藻科线粒体基因组相似。最后,使用23个预测的蛋白质结构域进行的系统发育分析表明与其他物种具有姐妹关系。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/12f9/10013388/91ec2013058a/TMDN_A_2183728_F0001_C.jpg

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