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两种极度濒危的琵琶鲼线粒体全基因组的特征分析:及 。

Characterization of the complete mitochondrial genomes of two Critically Endangered wedgefishes: and .

作者信息

Groeneveld M J, Klein J D, Bennett R H, Bester-van der Merwe A E

机构信息

Department of Genetics, Molecular Breeding and Biodiversity Group, Stellenbosch University, Stellenbosch, South Africa.

Wildlife Conservation Society, Western Indian Ocean Shark and Ray Conservation Program, Bronx, NY, USA.

出版信息

Mitochondrial DNA B Resour. 2023 Mar 7;8(3):352-358. doi: 10.1080/23802359.2023.2167479. eCollection 2023.

Abstract

We present the complete mitochondrial genomes of the Critically Endangered whitespotted wedgefish, (Forsskål, 1775), and bottlenose wedgefish, (Whitley, 1939), with the mitogenome documented for the first time. The genomes for and are 16,799 and 16,805 bp in length, respectively. Both comprise 13 protein-coding regions, 22 tRNA genes, two rRNA genes, and a non-coding control region. All protein-coding regions consistently start with the ATG start codon; however, the alternative start codon GTG is observed at the start of the gene. , , and have incomplete stop codons: T or TA, and and , have atypical codons: UAA, UGA, GCU, and UAG. The phylogenetic analysis places and within the genus, separate from other families in the order Rhinopristiformes. We also highlight the most variable gene regions to expedite future primer design, of which was the most variable (4.5%) when taking gene length into account. These molecular resources could promote the taxonomic resolution of the whitespotted wedgefish species complex and aid in the genetic characterization of populations of these and related species.

摘要

我们首次公布了极危物种白点楔齿鲨(Rhynchobatus australiae,福斯科尔,1775年)和宽吻楔齿鲨(Rhynchobatus djiddensis,惠特利,1939年)的完整线粒体基因组。澳大利亚楔齿鲨(Rhynchobatus australiae)和吉氏楔齿鲨(Rhynchobatus djiddensis)的基因组长度分别为16,799和16,805碱基对。两者均包含13个蛋白质编码区、22个tRNA基因、两个rRNA基因和一个非编码控制区。所有蛋白质编码区均以ATG起始密码子开始;然而,在细胞色素b(cytochrome b)基因起始处观察到替代起始密码子GTG。细胞色素b(cytochrome b)、ATP合酶亚基8(ATP synthase subunit 8)和ND6具有不完整的终止密码子:T或TA,而细胞色素氧化酶亚基I(cytochrome oxidase subunit I)和细胞色素氧化酶亚基II(cytochrome oxidase subunit II)具有非典型密码子:UAA、UGA、GCU和UAG。系统发育分析将澳大利亚楔齿鲨(Rhynchobatus australiae)和吉氏楔齿鲨(Rhynchobatus djiddensis)置于楔齿鲨属(Rhynchobatus)内,与鲼形目(Rhinopristiformes)中的其他科分开。我们还强调了最可变的基因区域,以加快未来引物设计,考虑基因长度时,细胞色素氧化酶亚基I(cytochrome oxidase subunit I)是最可变的(4.5%)。这些分子资源可以促进白点楔齿鲨物种复合体的分类学分辨率,并有助于对这些及相关物种的种群进行遗传特征分析。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5c3d/10013529/33e2e0fc84dc/TMDN_A_2167479_F0001_C.jpg

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